Gm24950 Gene Detail

Summary

• Symbol
  Gm24950
• Name
  predicted gene, 24950

• Feature Type
  snRNA gene
• IDs
  MGI:5454727
  NCBI Gene: 115487917
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:101532574-101532764 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  157 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5454727	snRNA gene	Chr11:101532574-101532764 (+)
129S1/SvImJ	ENSMUSG00200053204	snRNA gene	Chr11:98817080-98817270 (+)
A/J	ENSMUSG00195052905	snRNA gene	Chr11:98513731-98513921 (+)
AKR/J	ENSMUSG00220052854	snRNA gene	Chr11:98732989-98733179 (+)
BALB/cJ	ENSMUSG00180052177	snRNA gene	Chr11:98865209-98865399 (+)
C3H/HeJ	ENSMUSG00175052470	snRNA gene	Chr11:98790613-98790803 (+)
C57BL/6NJ	ENSMUSG00215054174	snRNA gene	Chr11:98352618-98352808 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005050719	snRNA gene	Chr11:98278857-98279047 (+)
CBA/J	ENSMUSG00210053758	snRNA gene	Chr11:98498452-98498642 (+)
DBA/2J	ENSMUSG00185053638	snRNA gene	Chr11:98840468-98840658 (+)
FVB/NJ	ENSMUSG00205049922	snRNA gene	Chr11:98683314-98683504 (+)
JF1/MsJ	ENSUMUG00000056057	snRNA gene	Chr11:99099929-99100119 (+)
LP/J	ENSMUSG00230051072	snRNA gene	Chr11:99893102-99893292 (+)
NOD/ShiLtJ	ENSMUSG00190053009	snRNA gene	Chr11:98879027-98879217 (+)
NZO/HlLtJ	ENSMUSG00225053449	snRNA gene	Chr11:101915312-101915502 (+)
PWK/PhJ	ENSLUMG00010052783	snRNA gene	Chr11:98636033-98636223 (+)
SPRET/EiJ	ENSMSPG00010051298	snRNA gene	Chr11:99132280-99132470 (+)
WSB/EiJ	ENSIUOG00005051357	snRNA gene	Chr11:98626528-98626718 (+)

Homology

• Gene Tree
  Gm24950
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving Gm24950
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000118718 (Evidence)
• NCBI Gene
  115487917

Representative Sequences			Length	Strain/Species
genomic	115487917	NCBI Gene Model | MGI Sequence Detail	191	C57BL/6J
transcript	XR_004937379	RefSeq | MGI Sequence Detail	191	C57BL/6J

References

• Summaries
  All 8

  Phenotypes 5
• Earliest
  J:56548 Zheng B, et al., Engineering a mouse balancer chromosome. Nat Genet. 1999 Aug;22(4):375-8
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52

TSS for Gm24950:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr105154	Chr11:101530872-101530877 (+)	-1,699 bp