Ankrd40cl MGI Mouse Gene Detail - MGI:5434049

Sequence Map

Chr11:94172699-94177079 bp, + strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5434049	protein coding gene	Chr11:94172665-94177086 (+)
129S1/SvImJ	ENSMUSG00200019970	protein coding gene	Chr11:91420737-91425105 (+)
A/J	ENSMUSG00195007769	protein coding gene	Chr11:91152726-91157247 (+)
AKR/J	ENSMUSG00220011515	protein coding gene	Chr11:91405160-91409681 (+)
BALB/cJ	ENSMUSG00180011146	protein coding gene	Chr11:91389929-91394297 (+)
C3H/HeJ	ENSMUSG00175027861	protein coding gene	Chr11:91412284-91416805 (+)
C57BL/6NJ	ENSMUSG00215025591	protein coding gene	Chr11:90987255-90991635 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0016976	protein coding gene	Chr11:90007304-90013465 (+)
CAST/EiJ	ENSTCUG00005015449	protein coding gene	Chr11:90842502-90846873 (+)
CBA/J	ENSMUSG00210037298	protein coding gene	Chr11:91115857-91120379 (+)
DBA/2J	ENSMUSG00185018241	protein coding gene	Chr11:91437072-91441452 (+)
FVB/NJ	ENSMUSG00205014821	protein coding gene	Chr11:91328256-91332629 (+)
JF1/MsJ	ENSUMUG00000051609	protein coding gene	Chr11:91783565-91788086 (+)
LP/J	ENSMUSG00230048147	protein coding gene	Chr11:92504029-92508397 (+)
NOD/ShiLtJ	ENSMUSG00190019298	protein coding gene	Chr11:91483727-91488095 (+)
NZO/HlLtJ	ENSMUSG00225051498	protein coding gene	Chr11:94544609-94548977 (+)
PWK/PhJ	ENSLUMG00010028271	protein coding gene	Chr11:91316696-91321226 (+)
SPRET/EiJ	ENSMSPG00010027521	protein coding gene	Chr11:91823542-91827891 (+)
WSB/EiJ	ENSIUOG00005006989	protein coding gene	Chr11:91266114-91270481 (+)

Vertebrate Orthology Source

Alliance of Genome Resources

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

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			Length	Strain/Species	Flank
genomic	ENSMUSG00000094091	Ensembl Gene Model \| MGI Sequence Detail	4381	C57BL/6J	± kb
transcript	ENSMUST00000208510	Ensembl \| MGI Sequence Detail	775	Not Applicable
polypeptide	ENSMUSP00000153501	Ensembl \| MGI Sequence Detail	145	Not Applicable

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UniProt

2 Sequences
InterPro Domains

IPR060551 ANKRD40-like, ubiquitin-like domain

IPR039195 Ankyrin repeat domain-containing protein 40

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MGI:6723903

Summaries

All 13

Diseases 1

Phenotypes 7
Earliest

J:56548 Zheng B, et al., Engineering a mouse balancer chromosome. Nat Genet. 1999 Aug;22(4):375-8
Latest

J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52

TSS for Ankrd40cl:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr104188	Chr11:94172657-94172691 (+)	-25 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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