Gm20234 Gene Detail

Summary

• Symbol
  Gm20234
• Name
  predicted gene, 20234

• Feature Type
  lncRNA gene
• IDs
  MGI:5012419
  NCBI Gene: 102635154
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr11:82956567-82958813 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 50.30 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  55 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5012419	lncRNA gene	Chr11:82918956-82962072 (-)
129S1/SvImJ	ENSMUSG00200052251	lncRNA gene	Chr11:80071191-80076688 (-)
A/J	ENSMUSG00195045959	lncRNA gene	Chr11:79937286-79942783 (-)
AKR/J	ENSMUSG00220048464	lncRNA gene	Chr11:80153118-80158636 (-)
BALB/cJ	ENSMUSG00180043634	lncRNA gene	Chr11:80145195-80150702 (-)
C3H/HeJ	ENSMUSG00175039993	lncRNA gene	Chr11:80107632-80113129 (-)
C57BL/6NJ	ENSMUSG00215042498	lncRNA gene	Chr11:79740531-79746034 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005046615	lncRNA gene	Chr11:79644881-79650372 (-)
CBA/J	ENSMUSG00210046748	lncRNA gene	Chr11:79925311-79930808 (-)
DBA/2J	ENSMUSG00185040068	lncRNA gene	Chr11:80235275-80240793 (-)
FVB/NJ	ENSMUSG00205048409	lncRNA gene	Chr11:80021319-80026824 (-)
JF1/MsJ	ENSUMUG00000053838	lncRNA gene	Chr11:80585451-80590944 (-)
LP/J	ENSMUSG00230030720	lncRNA gene	Chr11:81226593-81232090 (-)
NOD/ShiLtJ	ENSMUSG00190048962	lncRNA gene	Chr11:80256836-80262343 (-)
NZO/HlLtJ	ENSMUSG00225040311	lncRNA gene	Chr11:83418738-83424246 (-)
PWK/PhJ	ENSLUMG00010026373	lncRNA gene	Chr11:80107150-80112656 (-)
SPRET/EiJ	ENSMSPG00010045401	lncRNA gene	Chr11:80511482-80517023 (-)
WSB/EiJ	ENSIUOG00005036753	lncRNA gene	Chr11:80088496-80094004 (-)

Homology

• Gene Tree
  Gm20234
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Targeted
  1
• Genomic Mutations
  2 involving Gm20234
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  1

• Ensembl
  ENSMUSG00000111713 (Evidence)
• NCBI Gene
  102635154

Representative Sequences			Length	Strain/Species
genomic	102635154	NCBI Gene Model | MGI Sequence Detail	2247	C57BL/6J
transcript	XR_388923	RefSeq | MGI Sequence Detail	1141	C57BL/6J

References

• Summaries
  All 11

  Phenotypes 8
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52

TSS for Gm20234:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr109640	Chr11:82958074-82958117 (-)	717 bp
Tssr109639	Chr11:82957627-82957649 (-)	1,175 bp