Gm15893 Gene Detail

Summary

• Symbol
  Gm15893
• Name
  predicted gene 15893

• Feature Type
  lncRNA gene
• IDs
  MGI:3801832
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:88247117-88254773 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 52.40 cM

Strain
Comparison

• SNPs within 2kb
  109 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3801832	lncRNA gene	Chr11:88247117-88254773 (+)
129S1/SvImJ	ENSMUSG00200020776	lncRNA gene	Chr11:85390646-85398339 (+)
A/J	ENSMUSG00195009709	lncRNA gene	Chr11:85245569-85253262 (+)
AKR/J	ENSMUSG00220012298	lncRNA gene	Chr11:85445289-85452982 (+)
BALB/cJ	ENSMUSG00180011721	lncRNA gene	Chr11:85451646-85459337 (+)
C3H/HeJ	ENSMUSG00175033858	lncRNA gene	Chr11:85392122-85399815 (+)
C57BL/6NJ	ENSMUSG00215032693	lncRNA gene	Chr11:85023344-85031000 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002677	antisense lncRNA gene	Chr11:83593922-83601559 (+)
CAST/EiJ	ENSTCUG00005017105	lncRNA gene	Chr11:84946611-84954234 (+)
CBA/J	ENSMUSG00210042027	lncRNA gene	Chr11:85209665-85217358 (+)
DBA/2J	ENSMUSG00185020468	lncRNA gene	Chr11:85526427-85534120 (+)
FVB/NJ	ENSMUSG00205021784	lncRNA gene	Chr11:85405366-85413059 (+)
JF1/MsJ	ENSUMUG00000030892	lncRNA gene	Chr11:85848067-85855721 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190020203	lncRNA gene	Chr11:85557661-85565354 (+)
NZO/HlLtJ	ENSMUSG00225039750	lncRNA gene	Chr11:88674241-88681933 (+)
PWK/PhJ	ENSLUMG00010035918	lncRNA gene	Chr11:85397159-85404814 (+)
SPRET/EiJ	ENSMSPG00010029140	lncRNA gene	Chr11:85805868-85813602 (+)
WSB/EiJ	ENSIUOG00005008523	lncRNA gene	Chr11:85371216-85378909 (+)

Homology

• Gene Tree
  Gm15893
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  10 phenotype references
  

• All Mutations and Alleles
  6
• Chemically induced (other)
  1
• Gene trapped
  2
• Targeted
  3
• Genomic Mutations
  4 involving Gm15893
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000085246 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085246	Ensembl Gene Model | MGI Sequence Detail	7657	C57BL/6J
transcript	ENSMUST00000247057	Ensembl | MGI Sequence Detail	2466	Not Applicable

References

• Summaries
  All 15

  Diseases 1

  Phenotypes 10
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52

TSS for Gm15893:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr104046	Chr11:88247992-88248007 (+)	883 bp