Scgb1b6-ps Pseudogene Detail

Summary

• Symbol
  Scgb1b6-ps
• Name
  secretoglobin, family 1B, member 6, pseudogene
• Synonyms
  Abpa6-ps

• Feature Type
  pseudogene
• IDs
  MGI:3780117
  NCBI Gene: 108167494
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr7:31325213-31325411 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 19.33 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  190 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3780117	pseudogene	Chr7:31325025-31326217 (+)
129S1/SvImJ	no annotation
A/J	ENSMUSG00195051034	pseudogene	Chr7:23838697-23838895 (+)
AKR/J	ENSMUSG00220028979	pseudogene	Chr7:12524584-12524781 (+)
BALB/cJ	ENSMUSG00180024979	pseudogene	Chr7:21898312-21898510 (+)
C3H/HeJ	ENSMUSG00175044752	pseudogene	Chr7:22918466-22918664 (+)
C57BL/6NJ	ENSMUSG00215033111	pseudogene	Chr7:21020674-21020872 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005049902	pseudogene	Chr7:22771039-22771236 (+)
CBA/J	ENSMUSG00210028318	pseudogene	Chr7:22081064-22081262 (+)
DBA/2J	ENSMUSG00185053978	pseudogene	Chr7:25189939-25190136 (+)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000057641	pseudogene	Chr7:29663852-29664049 (+)
LP/J	ENSMUSG00230016140	pseudogene	Chr7:30396806-30397004 (+)
NOD/ShiLtJ	ENSMUSG00190008684	pseudogene	Chr7:21562936-21563134 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010023391	pseudogene	Chr7:21569687-21569884 (+)
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Scgb1b6-ps
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  16

• Ensembl
  ENSMUSG00000100639 (Evidence)
• NCBI Gene
  108167494

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100639	Ensembl Gene Model | MGI Sequence Detail	199	C57BL/6J
transcript	ENSMUST00000185337	Ensembl | MGI Sequence Detail	199	Not Applicable

References

• Summaries
  All 7
• Earliest
  J:174351 Laukaitis CM, et al., Rapid bursts of androgen-binding protein (Abp) gene duplication occurred independently in diverse mammals. BMC Evol Biol. 2008;8:46
• Latest
  J:185789 Jackson BC, et al., Update of the human secretoglobin (SCGB) gene superfamily and an example of 'evolutionary bloom' of androgen-binding protein genes within the mouse Scgb gene superfamily. Hum Genomics. 2011 Oct;5(6):691-702