Rhox3d-ps Pseudogene Detail

Summary

• Symbol
  Rhox3d-ps
• Name
  reproductive homeobox 3D, pseudogene
• Synonyms
  OTTMUSG00000017145, Rhox3.4, Rhox3d, Rhox3-ps

• Feature Type
  pseudogene
• IDs
  MGI:3770270
  NCBI Gene: 546295
• Member of
  Rhox cluster
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  ChrX:36685497-36689459 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 21.80 cM

Strain
Comparison

• SNPs within 2kb
  39 from dbSNP Build 142
• Strain Annotations
  20

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3770270	pseudogene	ChrX:36685136-36689460 (+)
129S1/SvImJ	ENSMUSG00200022355	pseudogene	ChrX:20628903-20629068 (+)
A/J	ENSMUSG00195025650	pseudogene	ChrX:23302187-23306469 (+)
AKR/J	ENSMUSG00220025368	pseudogene	ChrX:20437285-20438018 (-)
BALB/cJ	ENSMUSG00180012814	pseudogene	ChrX:21099506-21103826 (+)
C3H/HeJ	ENSMUSG00175024720	pseudogene	ChrX:24045498-24049822 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005034655	pseudogene	ChrX:23044049-23048328 (+)
CBA/J	ENSMUSG00210035332	pseudogene	ChrX:21361044-21365368 (+)
CBA/J	ENSMUSG00210036060	pseudogene	ChrX:21279185-21283461 (+)
DBA/2J	ENSMUSG00185025042	pseudogene	ChrX:32041857-32046181 (+)
FVB/NJ	ENSMUSG00205025012	pseudogene	ChrX:20005741-20010065 (+)
JF1/MsJ	ENSUMUG00000030796	pseudogene	ChrX:51039836-51044116 (+)
LP/J	ENSMUSG00230015173	pseudogene	ChrX:38368997-38373277 (+)
LP/J	ENSMUSG00230014575	pseudogene	ChrX:38534036-38538360 (+)
NOD/ShiLtJ	ENSMUSG00190023285	pseudogene	ChrX:20636405-20640683 (-)
NZO/HlLtJ	ENSMUSG00225040255	pseudogene	ChrX:43575452-43579732 (+)
NZO/HlLtJ	ENSMUSG00225039643	pseudogene	ChrX:43740515-43744839 (+)
PWK/PhJ	ENSLUMG00010037509	pseudogene	ChrX:20702327-20706607 (+)
SPRET/EiJ	ENSMSPG00010017921	pseudogene	ChrX:21979396-21983673 (+)
WSB/EiJ	ENSIUOG00005038857	pseudogene	ChrX:21560551-21564833 (+)

Homology

• Gene Tree
  Rhox3d-ps
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Targeted
  1
• Transgenic
  1
• Genomic Mutations
  2 involving Rhox3d-ps
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000082297 (Evidence)
• NCBI Gene
  546295

Representative Sequences			Length	Strain/Species
genomic	546295	NCBI Gene Model | MGI Sequence Detail	3963	C57BL/6J

Molecular
Reagents

• All nucleic 1

  Genomic 1

Other
Accession IDs

MGI:3705863

References

• Summaries
  All 13

  Phenotypes 3
• Earliest
  J:96937 Maclean JA 2nd, et al., Rhox: a new homeobox gene cluster. Cell. 2005 Feb 11;120(3):369-82
• Latest
  J:306454 Tan K, et al., The Rhox gene cluster suppresses germline LINE1 transposition. Proc Natl Acad Sci U S A. 2021 Jun 8;118(23):e2024785118