Rhox3b-ps Pseudogene Detail

Summary

• Symbol
  Rhox3b-ps
• Name
  reproductive homeobox 3B, pseudogene
• Synonyms
  Rhox3b

• Feature Type
  pseudogene
• IDs
  MGI:3770264
  NCBI Gene: 100135653
• Member of
  Rhox cluster
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  ChrX:36598665-36607616 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 21.72 cM

Strain
Comparison

• SNPs within 2kb
  48 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3770264	pseudogene	ChrX:36598665-36607796 (+)
129S1/SvImJ	ENSMUSG00200022028	pseudogene	ChrX:20654936-20663811 (+)
A/J	no annotation
AKR/J	ENSMUSG00220025031	pseudogene	ChrX:20458932-20463210 (-)
BALB/cJ	ENSMUSG00180013144	pseudogene	ChrX:20849663-20858547 (-)
BALB/cJ	ENSMUSG00180013132	pseudogene	ChrX:21094851-21103826 (+)
BALB/cJ	ENSMUSG00180013155	pseudogene	ChrX:21060809-21069687 (+)
BALB/cJ	ENSMUSG00180013149	pseudogene	ChrX:21016739-21026598 (+)
C3H/HeJ	ENSMUSG00175024863	pseudogene	ChrX:24085267-24094144 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005034501	pseudogene	ChrX:23072383-23081332 (+)
CBA/J	ENSMUSG00210035949	pseudogene	ChrX:21399574-21408456 (+)
DBA/2J	ENSMUSG00185025045	pseudogene	ChrX:31955389-32046181 (+)
FVB/NJ	ENSMUSG00205024946	pseudogene	ChrX:20036352-20040632 (+)
JF1/MsJ	ENSUMUG00000031139	pseudogene	ChrX:51076767-51085691 (+)
LP/J	ENSMUSG00230014271	pseudogene	ChrX:38489136-38581452 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225040220	pseudogene	ChrX:43612457-43621336 (+)
NZO/HlLtJ	ENSMUSG00225039527	pseudogene	ChrX:43779053-43787931 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005040086	pseudogene	ChrX:21555975-21564833 (+)

Homology

• Gene Tree
  Rhox3b-ps
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Targeted
  1
• Transgenic
  1
• Genomic Mutations
  2 involving Rhox3b-ps
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000084056 (Evidence)
• NCBI Gene
  100135653

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084056	Ensembl Gene Model | MGI Sequence Detail	8952	C57BL/6J
transcript	ENSMUST00000121045	Ensembl | MGI Sequence Detail	868	Not Applicable

Molecular
Reagents

• All nucleic 2

  Genomic 1

  cDNA 1

Other
Accession IDs

MGI:3705830

References

• Summaries
  All 15

  Phenotypes 3
• Earliest
  J:96937 Maclean JA 2nd, et al., Rhox: a new homeobox gene cluster. Cell. 2005 Feb 11;120(3):369-82
• Latest
  J:306454 Tan K, et al., The Rhox gene cluster suppresses germline LINE1 transposition. Proc Natl Acad Sci U S A. 2021 Jun 8;118(23):e2024785118