Rhox11-ps2 Pseudogene Detail

Summary

• Symbol
  Rhox11-ps2
• Name
  reproductive homeobox 11, pseudogene 2
• Synonyms
  Gm14544

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3705790
  NCBI Gene: 102637882
• Member of
  Rhox cluster
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:37029693-37034479 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 22.19 cM

Strain
Comparison

• SNPs within 2kb
  138 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3705790	pseudogene	ChrX:37029473-37034541 (-)
129S1/SvImJ	ENSMUSG00200022178	pseudogene	ChrX:20960961-20965747 (-)
A/J	ENSMUSG00195025980	pseudogene	ChrX:23651560-23656346 (-)
AKR/J	ENSMUSG00220024722	pseudogene	ChrX:20649130-20653916 (-)
BALB/cJ	ENSMUSG00180012933	pseudogene	ChrX:21398254-21403040 (-)
C3H/HeJ	ENSMUSG00175024344	pseudogene	ChrX:24391435-24396219 (-)
C57BL/6NJ	ENSMUSG00215024656	pseudogene	ChrX:21361253-21366039 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0037497	pseudogene	ChrX:31317427-31322216 (-)
CAST/EiJ	ENSTCUG00005033831	pseudogene	ChrX:23510239-23515039 (-)
CBA/J	ENSMUSG00210034926	pseudogene	ChrX:21705614-21710400 (-)
DBA/2J	ENSMUSG00185024538	pseudogene	ChrX:32386140-32390926 (-)
FVB/NJ	ENSMUSG00205008054	pseudogene	ChrX:20337825-20342611 (-)
JF1/MsJ	ENSUMUG00000030146	pseudogene	ChrX:51405234-51410008 (-)
LP/J	ENSMUSG00230014642	pseudogene	ChrX:38878584-38883370 (-)
NOD/ShiLtJ	ENSMUSG00190022263	pseudogene	ChrX:20826606-20831392 (-)
NZO/HlLtJ	ENSMUSG00225039663	pseudogene	ChrX:44085116-44089902 (-)
PWK/PhJ	ENSLUMG00010038339	pseudogene	ChrX:21129556-21134357 (-)
SPRET/EiJ	ENSMSPG00010017978	pseudogene	ChrX:22502781-22507502 (-)
WSB/EiJ	ENSIUOG00005039715	pseudogene	ChrX:21854362-21859134 (-)

Homology

• Gene Tree
  Rhox11-ps2
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving Rhox11-ps2
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000081133 (Evidence)
• NCBI Gene
  102637882

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081133	Ensembl Gene Model | MGI Sequence Detail	4787	C57BL/6J
transcript	ENSMUST00000117962	Ensembl | MGI Sequence Detail	451	Not Applicable

References

• Summaries
  All 9

  Phenotypes 3
• Earliest
  J:229199 Song HW, et al., shRNA off-target effects in vivo: impaired endogenous siRNA expression and spermatogenic defects. PLoS One. 2015;10(3):e0118549
• Latest
  J:306454 Tan K, et al., The Rhox gene cluster suppresses germline LINE1 transposition. Proc Natl Acad Sci U S A. 2021 Jun 8;118(23):e2024785118

TSS for Rhox11-ps2:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr163176	ChrX:37034531-37034552 (-)	-63 bp