Gm10392 Gene Detail

Summary

• Symbol
  Gm10392
• Name
  predicted gene 10392

• Feature Type
  lncRNA gene
• IDs
  MGI:3704377
  NCBI Gene: 100049168
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:77407486-77410024 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 46.63 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  146 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3704377	lncRNA gene	Chr11:77407486-77410024 (-)
129S1/SvImJ	ENSMUSG00200051973	lncRNA gene	Chr11:74524192-74526731 (-)
A/J	ENSMUSG00195044760	lncRNA gene	Chr11:74402755-74405294 (-)
AKR/J	ENSMUSG00220048917	lncRNA gene	Chr11:74627679-74630219 (-)
BALB/cJ	ENSMUSG00180043392	lncRNA gene	Chr11:74591735-74594273 (-)
C3H/HeJ	ENSMUSG00175038872	lncRNA gene	Chr11:74561041-74563582 (-)
C57BL/6NJ	ENSMUSG00215042144	lncRNA gene	Chr11:74184937-74187476 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0016777	protein coding gene	Chr11:72444325-72446844 (-)
CAST/EiJ	ENSTCUG00005045445	lncRNA gene	Chr11:74081432-74083994 (-)
CBA/J	ENSMUSG00210047834	lncRNA gene	Chr11:74379467-74382006 (-)
DBA/2J	ENSMUSG00185039722	lncRNA gene	Chr11:74649450-74651990 (-)
FVB/NJ	ENSMUSG00205046489	lncRNA gene	Chr11:74486679-74489217 (-)
JF1/MsJ	ENSUMUG00000054545	lncRNA gene	Chr11:75023901-75026431 (-)
LP/J	ENSMUSG00230049765	lncRNA gene	Chr11:75679970-75682508 (-)
NOD/ShiLtJ	ENSMUSG00190048461	lncRNA gene	Chr11:74696587-74699125 (-)
NZO/HlLtJ	ENSMUSG00225039496	lncRNA gene	Chr11:77847450-77849988 (-)
PWK/PhJ	ENSLUMG00010025940	lncRNA gene	Chr11:74550690-74553216 (-)
SPRET/EiJ	ENSMSPG00010044147	lncRNA gene	Chr11:74958572-74961091 (-)
WSB/EiJ	ENSIUOG00005035806	lncRNA gene	Chr11:74534736-74537274 (-)

Homology

• Gene Tree
  Gm10392
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Targeted
  1
• Genomic Mutations
  2 involving Gm10392
• Find Mice (IMSR)
  3 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000072673 (Evidence)
• NCBI Gene
  100049168

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000072673	Ensembl Gene Model | MGI Sequence Detail	2539	C57BL/6J
transcript	ENSMUST00000100807	Ensembl | MGI Sequence Detail	1732	Not Applicable
polypeptide	Q3V3I3	UniProt | EBI | MGI Sequence Detail	114	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 16

  Phenotypes 8
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52

TSS for Gm10392:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr109337	Chr11:77410012-77410044 (-)	-4 bp