Gm12359 Gene Detail

Summary

• Symbol
  Gm12359
• Name
  predicted gene 12359

• Feature Type
  lncRNA gene
• IDs
  MGI:3702436
  NCBI Gene: 100037262
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:98689135-98700915 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 62.67 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  297 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3702436	lncRNA gene	Chr11:98688399-98700915 (-)
129S1/SvImJ	ENSMUSG00200053471	lncRNA gene	Chr11:95943760-95962593 (-)
A/J	ENSMUSG00195052415	lncRNA gene	Chr11:95658763-95671145 (-)
AKR/J	ENSMUSG00220053038	lncRNA gene	Chr11:95917848-95930208 (-)
BALB/cJ	ENSMUSG00180052414	lncRNA gene	Chr11:95930486-95942866 (-)
C3H/HeJ	ENSMUSG00175052090	lncRNA gene	Chr11:95917315-95936148 (-)
C57BL/6NJ	ENSMUSG00215054119	lncRNA gene	Chr11:95506824-95519205 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002699	antisense lncRNA gene	Chr11:94714003-94726045 (-)
CAST/EiJ	ENSTCUG00005050797	lncRNA gene	Chr11:95436538-95448812 (-)
CBA/J	ENSMUSG00210053549	lncRNA gene	Chr11:95620743-95633125 (-)
DBA/2J	ENSMUSG00185053214	lncRNA gene	Chr11:95967242-95986077 (-)
FVB/NJ	ENSMUSG00205051150	lncRNA gene	Chr11:95834172-95853005 (-)
JF1/MsJ	ENSUMUG00000055384	lncRNA gene	Chr11:96267985-96280300 (-)
LP/J	ENSMUSG00230051205	lncRNA gene	Chr11:97020132-97038965 (-)
NOD/ShiLtJ	ENSMUSG00190053153	lncRNA gene	Chr11:96008468-96020848 (-)
NZO/HlLtJ	ENSMUSG00225052941	lncRNA gene	Chr11:99069517-99081897 (-)
PWK/PhJ	ENSLUMG00010052683	lncRNA gene	Chr11:95818588-95830896 (-)
SPRET/EiJ	ENSMSPG00010051231	lncRNA gene	Chr11:96346873-96359417 (-)
WSB/EiJ	ENSIUOG00005051032	lncRNA gene	Chr11:95778027-95790368 (-)

Homology

• Gene Tree
  Gm12359
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  7
• Gene trapped
  6
• Targeted
  1
• Genomic Mutations
  1 involving Gm12359
• Find Mice (IMSR)
  10 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  7

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  31
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000075576 (Evidence)
• NCBI Gene
  100037262

Representative Sequences			Length	Strain/Species
genomic	100037262	NCBI Gene Model | MGI Sequence Detail	11781	C57BL/6J
transcript	NR_033551	RefSeq | MGI Sequence Detail	1401	C57BL/6
polypeptide	Q3UQ07	UniProt | EBI | MGI Sequence Detail	208	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 7

  cDNA 7

  
  

  Microarray probesets 2

References

• Summaries
  All 21

  Phenotypes 7
• Earliest
  J:56548 Zheng B, et al., Engineering a mouse balancer chromosome. Nat Genet. 1999 Aug;22(4):375-8
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52

TSS for Gm12359:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr110603	Chr11:98700905-98700928 (-)	-2 bp