Gm11534 Gene Detail

Summary

• Symbol
  Gm11534
• Name
  predicted gene 11534

• Feature Type
  lncRNA gene
• IDs
  MGI:3650775
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr11:95759980-95767206 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 59.02 cM

Strain
Comparison

• SNPs within 2kb
  332 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650775	lncRNA gene	Chr11:95759980-95767206 (+)
129S1/SvImJ	ENSMUSG00200053679	lncRNA gene	Chr11:93004337-93011561 (+)
A/J	ENSMUSG00195052938	lncRNA gene	Chr11:92723183-92730415 (+)
AKR/J	ENSMUSG00220051620	lncRNA gene	Chr11:92982208-92989441 (+)
BALB/cJ	ENSMUSG00180052975	lncRNA gene	Chr11:92987529-92994787 (+)
C3H/HeJ	ENSMUSG00175052626	lncRNA gene	Chr11:92982531-92989762 (+)
C57BL/6NJ	ENSMUSG00215054408	lncRNA gene	Chr11:92577324-92584552 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002687	antisense lncRNA gene	Chr11:91614302-91621925 (+)
CAST/EiJ	ENSTCUG00005017563	lncRNA gene	Chr11:92431939-92439167 (+)
CBA/J	ENSMUSG00210053559	lncRNA gene	Chr11:92685814-92693046 (+)
DBA/2J	ENSMUSG00185051972	lncRNA gene	Chr11:93035227-93042452 (+)
FVB/NJ	ENSMUSG00205050968	lncRNA gene	Chr11:92891358-92898582 (+)
JF1/MsJ	ENSUMUG00000055335	lncRNA gene	Chr11:93338172-93345403 (+)
LP/J	ENSMUSG00230051400	lncRNA gene	Chr11:94087496-94094719 (+)
NOD/ShiLtJ	ENSMUSG00190051915	lncRNA gene	Chr11:93081258-93088516 (+)
NZO/HlLtJ	ENSMUSG00225053272	lncRNA gene	Chr11:96143493-96150716 (+)
PWK/PhJ	ENSLUMG00010051300	lncRNA gene	Chr11:92887285-92894484 (+)
SPRET/EiJ	ENSMSPG00010050415	lncRNA gene	Chr11:93376304-93383606 (+)
WSB/EiJ	ENSIUOG00005051954	lncRNA gene	Chr11:92842791-92850039 (+)

Homology

• Gene Tree
  Gm11534
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Targeted
  2
• Genomic Mutations
  2 involving Gm11534
• Find Mice (IMSR)
  3 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000086255 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086255	Ensembl Gene Model | MGI Sequence Detail	7227	C57BL/6J
transcript	ENSMUST00000129261	Ensembl | MGI Sequence Detail	470	Not Applicable

References

• Summaries
  All 9

  Phenotypes 6
• Earliest
  J:56548 Zheng B, et al., Engineering a mouse balancer chromosome. Nat Genet. 1999 Aug;22(4):375-8
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52