Scgb1b23-ps Pseudogene Detail

Summary

• Symbol
  Scgb1b23-ps
• Name
  secretoglobin, family 1B, member 23, pseudogene
• Synonyms
  Abpa23-ps

• Feature Type
  pseudogene
• IDs
  MGI:3650279
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:33334589-33334958 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 19.36 cM

Strain
Comparison

• SNPs within 2kb
  127 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650279	pseudogene	Chr7:33334589-33334958 (+)
129S1/SvImJ	ENSMUSG00200027468	pseudogene	Chr7:22068214-22068583 (+)
A/J	ENSMUSG00195050236	pseudogene	Chr7:25018672-25019040 (+)
AKR/J	no annotation
BALB/cJ	ENSMUSG00180021447	pseudogene	Chr7:22585019-22585387 (+)
C3H/HeJ	ENSMUSG00175003317	pseudogene	Chr7:48124155-48124524 (+)
C57BL/6NJ	ENSMUSG00215032687	pseudogene	Chr7:22481198-22481567 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005049846	pseudogene	Chr7:24197970-24198339 (+)
CBA/J	ENSMUSG00210027593	pseudogene	Chr7:23146547-23146916 (+)
DBA/2J	ENSMUSG00185054441	pseudogene	Chr7:25860709-25861078 (+)
FVB/NJ	ENSMUSG00205019907	pseudogene	Chr7:22879679-22880048 (+)
JF1/MsJ	ENSUMUG00000034529	pseudogene	Chr7:30339984-30340353 (+)
LP/J	ENSMUSG00230015527	pseudogene	Chr7:31573121-31573490 (+)
NOD/ShiLtJ	ENSMUSG00190009218	pseudogene	Chr7:22738624-22738992 (+)
NZO/HlLtJ	ENSMUSG00225027747	pseudogene	Chr7:29904866-29905235 (+)
PWK/PhJ	ENSLUMG00010023869	pseudogene	Chr7:22254936-22255305 (+)
SPRET/EiJ	ENSMSPG00010006079	pseudogene	Chr7:22445009-22445378 (+)
WSB/EiJ	ENSIUOG00005008959	pseudogene	Chr7:22931049-22931418 (+)

Homology

• Gene Tree
  Scgb1b23-ps
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000079893 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000079893	Ensembl Gene Model | MGI Sequence Detail	370	C57BL/6J
transcript	ENSMUST00000116009	Ensembl | MGI Sequence Detail	252	Not Applicable

References

• Summaries
  All 6
• Earliest
  J:174351 Laukaitis CM, et al., Rapid bursts of androgen-binding protein (Abp) gene duplication occurred independently in diverse mammals. BMC Evol Biol. 2008;8:46
• Latest
  J:185789 Jackson BC, et al., Update of the human secretoglobin (SCGB) gene superfamily and an example of 'evolutionary bloom' of androgen-binding protein genes within the mouse Scgb gene superfamily. Hum Genomics. 2011 Oct;5(6):691-702

TSS for Scgb1b23-ps:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr65865	Chr7:33334570-33334572 (+)	-18 bp