Gm11635 Gene Detail

Summary

• Symbol
  Gm11635
• Name
  predicted gene 11635

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:3650265
  NCBI Gene: 666331
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr11:101501526-101507464 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 65.48 cM

Strain
Comparison

• SNPs within 2kb
  364 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650265	protein coding gene	Chr11:101499579-101507616 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0005297	lincRNA gene	Chr11:104500422-104506140 (+)
A/J	MGP_AJ_G0005281	lincRNA gene	Chr11:100103165-100109136 (+)
AKR/J	MGP_AKRJ_G0005259	lincRNA gene	Chr11:103208589-103213991 (+)
BALB/cJ	MGP_BALBcJ_G0005262	lincRNA gene	Chr11:100586392-100591890 (+)
C3H/HeJ	MGP_C3HHeJ_G0005211	lincRNA gene	Chr11:103385356-103390591 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005414	lincRNA gene	Chr11:107773635-107778822 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004806	lincRNA gene	Chr11:97495381-97559159 (+)
CAST/EiJ	MGP_CASTEiJ_G0005158	lincRNA gene	Chr11:104371018-104376180 (+)
CBA/J	MGP_CBAJ_G0005201	lincRNA gene	Chr11:112201232-112206455 (+)
DBA/2J	MGP_DBA2J_G0005218	lincRNA gene	Chr11:99616745-99622304 (+)
FVB/NJ	MGP_FVBNJ_G0005243	lincRNA gene	Chr11:99161174-99166421 (+)
LP/J	MGP_LPJ_G0005299	lincRNA gene	Chr11:105039923-105046538 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0005225	lincRNA gene	Chr11:111777414-111782772 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005418	lincRNA gene	Chr11:103540600-103547305 (+)
PWK/PhJ	MGP_PWKPhJ_G0005107	lincRNA gene	Chr11:100683709-100689465 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0005029	lincRNA gene	Chr11:103282483-103292826 (+)
WSB/EiJ	MGP_WSBEiJ_G0005206	lincRNA gene	Chr11:103534899-103547200 (+)

Homology

• Gene Tree
  Gm11635
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  9
• Gene trapped
  8
• Targeted
  1
• Genomic Mutations
  1 involving Gm11635
• Find Mice (IMSR)
  10 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  40
• RefSeq
  4

• Ensembl
  ENSMUSG00000086617 (Evidence)
• NCBI Gene
  666331

Representative Sequences			Length	Strain/Species
genomic	666331	NCBI Gene Model | MGI Sequence Detail	5939	C57BL/6J
transcript	NM_001256318	RefSeq | MGI Sequence Detail	472	ZRU/MplStud
polypeptide	NP_001243247	RefSeq | MGI Sequence Detail	121	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 14

  Phenotypes 8
• Earliest
  J:56548 Zheng B, et al., Engineering a mouse balancer chromosome. Nat Genet. 1999 Aug;22(4):375-8
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52

TSS for Gm11635:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr105151	Chr11:101501474-101501488 (+)	-45 bp
Tssr105152	Chr11:101501512-101501519 (+)	-10 bp