Gm11535 Gene Detail

Summary

• Symbol
  Gm11535
• Name
  predicted gene 11535

• Feature Type
  lncRNA gene
• IDs
  MGI:3650113
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:96068309-96075873 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 59.59 cM

Strain
Comparison

• SNPs within 2kb
  343 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650113	lncRNA gene	Chr11:96068309-96075873 (+)
129S1/SvImJ	ENSMUSG00200053171	lncRNA gene	Chr11:93312734-93313983 (+)
A/J	ENSMUSG00195052270	lncRNA gene	Chr11:93034534-93035783 (+)
AKR/J	ENSMUSG00220052781	lncRNA gene	Chr11:93293578-93294827 (+)
BALB/cJ	ENSMUSG00180052754	lncRNA gene	Chr11:93295853-93297105 (+)
C3H/HeJ	ENSMUSG00175051798	lncRNA gene	Chr11:93293393-93294645 (+)
C57BL/6NJ	ENSMUSG00215054431	lncRNA gene	Chr11:92885872-92887121 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004800	lincRNA gene	Chr11:91947585-91948847 (+)
CAST/EiJ	ENSTCUG00005051277	lncRNA gene	Chr11:92738317-92739569 (+)
CBA/J	ENSMUSG00210053775	lncRNA gene	Chr11:92997021-92998270 (+)
DBA/2J	ENSMUSG00185052149	lncRNA gene	Chr11:93343204-93344456 (+)
FVB/NJ	ENSMUSG00205049692	lncRNA gene	Chr11:93199791-93201040 (+)
JF1/MsJ	ENSUMUG00000055713	lncRNA gene	Chr11:93649595-93650844 (+)
LP/J	ENSMUSG00230051406	lncRNA gene	Chr11:94395837-94397086 (+)
NOD/ShiLtJ	ENSMUSG00190051653	lncRNA gene	Chr11:93389513-93390765 (+)
NZO/HlLtJ	ENSMUSG00225053287	lncRNA gene	Chr11:96451549-96452801 (+)
PWK/PhJ	ENSLUMG00010051514	lncRNA gene	Chr11:93195679-93196928 (+)
SPRET/EiJ	ENSMSPG00010050928	lncRNA gene	Chr11:93691080-93692328 (+)
WSB/EiJ	ENSIUOG00005051744	lncRNA gene	Chr11:93138916-93140165 (+)

Homology

• Gene Tree
  Gm11535
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Targeted
  2
• Genomic Mutations
  2 involving Gm11535
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25

• Ensembl
  ENSMUSG00000086337 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086337	Ensembl Gene Model | MGI Sequence Detail	7565	C57BL/6J
transcript	ENSMUST00000145517	Ensembl | MGI Sequence Detail	1150	Not Applicable

References

• Summaries
  All 11

  Phenotypes 6
• Earliest
  J:56548 Zheng B, et al., Engineering a mouse balancer chromosome. Nat Genet. 1999 Aug;22(4):375-8
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52

TSS for Gm11535:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr104431	Chr11:96068189-96068192 (+)	-118 bp