Gm11542 Gene Detail

Summary

• Symbol
  Gm11542
• Name
  predicted gene 11542

• Feature Type
  lncRNA gene
• IDs
  MGI:3650067
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr11:94568380-94578496 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 58.90 cM

Strain
Comparison

• SNPs within 2kb
  348 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650067	lncRNA gene	Chr11:94568380-94578496 (+)
129S1/SvImJ	ENSMUSG00200053741	lncRNA gene	Chr11:91810384-91820622 (+)
A/J	ENSMUSG00195009734	lncRNA gene	Chr11:91548450-91558735 (+)
AKR/J	ENSMUSG00220012351	lncRNA gene	Chr11:91800942-91817676 (+)
BALB/cJ	ENSMUSG00180011711	lncRNA gene	Chr11:91779700-91789798 (+)
C3H/HeJ	ENSMUSG00175052506	lncRNA gene	Chr11:91808027-91818322 (+)
C57BL/6NJ	ENSMUSG00215030391	lncRNA gene	Chr11:91384126-91394226 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013331	unclassified non-coding RNA gene	Chr11:90398764-90409254 (+)
CAST/EiJ	ENSTCUG00005017484	lncRNA gene	Chr11:91239299-91249576 (+)
CBA/J	ENSMUSG00210041948	lncRNA gene	Chr11:91511496-91521795 (+)
DBA/2J	ENSMUSG00185052758	lncRNA gene	Chr11:91832875-91842970 (+)
FVB/NJ	ENSMUSG00205050646	lncRNA gene	Chr11:91717043-91727131 (+)
JF1/MsJ	ENSUMUG00000055421	lncRNA gene	Chr11:92173650-92183971 (+)
LP/J	ENSMUSG00230051375	lncRNA gene	Chr11:92893621-92903857 (+)
NOD/ShiLtJ	ENSMUSG00190051977	lncRNA gene	Chr11:91873470-91883566 (+)
NZO/HlLtJ	ENSMUSG00225053210	lncRNA gene	Chr11:94940623-94950728 (+)
PWK/PhJ	ENSLUMG00010035078	lncRNA gene	Chr11:91711437-91721818 (+)
SPRET/EiJ	ENSMSPG00010029300	lncRNA gene	Chr11:92212115-92222578 (+)
WSB/EiJ	ENSIUOG00005051120	lncRNA gene	Chr11:91655895-91665991 (+)

Homology

• Gene Tree
  Gm11542
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Targeted
  2
• Genomic Mutations
  2 involving Gm11542
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000085051 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085051	Ensembl Gene Model | MGI Sequence Detail	10117	C57BL/6J
transcript	ENSMUST00000252359	Ensembl | MGI Sequence Detail	1591	Not Applicable

References

• Summaries
  All 10

  Phenotypes 6
• Earliest
  J:56548 Zheng B, et al., Engineering a mouse balancer chromosome. Nat Genet. 1999 Aug;22(4):375-8
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52

TSS for Gm11542:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr104223	Chr11:94568404-94568458 (+)	51 bp
Tssr104224	Chr11:94572636-94572641 (+)	4,259 bp