Gm11538 Gene Detail

Summary

• Symbol
  Gm11538
• Name
  predicted gene 11538

• Feature Type
  lncRNA gene
• IDs
  MGI:3649911
  NCBI Gene: 432593
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:96094280-96096306 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 59.65 cM

Strain
Comparison

• SNPs within 2kb
  185 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649911	lncRNA gene	Chr11:96093413-96098976 (+)
129S1/SvImJ	ENSMUSG00200053159	lncRNA gene	Chr11:93338636-93340672 (+)
A/J	ENSMUSG00195052262	lncRNA gene	Chr11:93060320-93062357 (+)
AKR/J	ENSMUSG00220052771	lncRNA gene	Chr11:93319369-93321406 (+)
BALB/cJ	ENSMUSG00180052741	lncRNA gene	Chr11:93321804-93323840 (+)
C3H/HeJ	ENSMUSG00175051782	lncRNA gene	Chr11:93319347-93321383 (+)
C57BL/6NJ	ENSMUSG00215054422	lncRNA gene	Chr11:92911772-92913808 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005051270	lncRNA gene	Chr11:92764194-92766226 (+)
CBA/J	ENSMUSG00210053772	lncRNA gene	Chr11:93022814-93024851 (+)
DBA/2J	ENSMUSG00185052110	lncRNA gene	Chr11:93369162-93371198 (+)
FVB/NJ	ENSMUSG00205049655	lncRNA gene	Chr11:93225697-93227733 (+)
JF1/MsJ	ENSUMUG00000055699	lncRNA gene	Chr11:93675383-93677420 (+)
LP/J	ENSMUSG00230051439	lncRNA gene	Chr11:94421720-94423756 (+)
NOD/ShiLtJ	ENSMUSG00190051615	lncRNA gene	Chr11:93415453-93417489 (+)
NZO/HlLtJ	ENSMUSG00225053379	lncRNA gene	Chr11:96477494-96479530 (+)
PWK/PhJ	ENSLUMG00010051497	lncRNA gene	Chr11:93221555-93223591 (+)
SPRET/EiJ	ENSMSPG00010050925	lncRNA gene	Chr11:93716920-93718956 (+)
WSB/EiJ	ENSIUOG00005051723	lncRNA gene	Chr11:93164839-93166875 (+)

Homology

• Gene Tree
  Gm11538
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Targeted
  2
• Genomic Mutations
  2 involving Gm11538
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• cDNA Data
  3

• Other Mouse Links
  Allen Institute
  GEO

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1

• Ensembl
  ENSMUSG00000120888 (Evidence)
• NCBI Gene
  432593

Representative Sequences			Length	Strain/Species
genomic	432593	NCBI Gene Model | MGI Sequence Detail	2027	C57BL/6J
transcript	NR_108029	RefSeq | MGI Sequence Detail	1945	C57BL/6

Molecular
Reagents

• All nucleic 3

  cDNA 3

References

• Summaries
  All 15

  Phenotypes 6
• Earliest
  J:56548 Zheng B, et al., Engineering a mouse balancer chromosome. Nat Genet. 1999 Aug;22(4):375-8
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52

TSS for Gm11538:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr104437	Chr11:96094267-96094284 (+)	-4 bp