Scgb2b22-ps Pseudogene Detail

Summary

• Symbol
  Scgb2b22-ps
• Name
  secretoglobin, family 2B, member 22, pseudogene
• Synonyms
  Abpbg22-ps

• Feature Type
  pseudogene
• IDs
  MGI:3649641
  NCBI Gene: 100043398
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:33303689-33305477 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 19.36 cM

Strain
Comparison

• SNPs within 2kb
  300 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649641	pseudogene	Chr7:33303689-33305477 (-)
129S1/SvImJ	ENSMUSG00200027455	pseudogene	Chr7:22037300-22039087 (-)
A/J	ENSMUSG00195050225	pseudogene	Chr7:24987767-24989554 (-)
AKR/J	no annotation
BALB/cJ	ENSMUSG00180021429	pseudogene	Chr7:22554116-22555903 (-)
C3H/HeJ	ENSMUSG00175003314	pseudogene	Chr7:48093255-48095043 (-)
C57BL/6NJ	ENSMUSG00215032638	pseudogene	Chr7:22450296-22452084 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005049823	pseudogene	Chr7:24167419-24169219 (-)
CBA/J	ENSMUSG00210027584	pseudogene	Chr7:23115647-23117435 (-)
DBA/2J	ENSMUSG00185054434	pseudogene	Chr7:25829891-25831693 (-)
FVB/NJ	ENSMUSG00205019878	pseudogene	Chr7:22848779-22850567 (-)
JF1/MsJ	ENSUMUG00000034496	pseudogene	Chr7:30309158-30310960 (-)
LP/J	ENSMUSG00230015150	pseudogene	Chr7:31542210-31543997 (-)
NOD/ShiLtJ	ENSMUSG00190009212	pseudogene	Chr7:22707723-22709510 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010023857	pseudogene	Chr7:22224121-22225923 (-)
SPRET/EiJ	ENSMSPG00010006083	pseudogene	Chr7:22415207-22417000 (-)
WSB/EiJ	ENSIUOG00005008953	pseudogene	Chr7:22900133-22901921 (-)

Homology

• Gene Tree
  Scgb2b22-ps
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18

• Ensembl
  ENSMUSG00000083381 (Evidence)
• NCBI Gene
  100043398

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083381	Ensembl Gene Model | MGI Sequence Detail	1789	C57BL/6J
transcript	ENSMUST00000121947	Ensembl | MGI Sequence Detail	340	Not Applicable

References

• Summaries
  All 9

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:185789 Jackson BC, et al., Update of the human secretoglobin (SCGB) gene superfamily and an example of 'evolutionary bloom' of androgen-binding protein genes within the mouse Scgb gene superfamily. Hum Genomics. 2011 Oct;5(6):691-702

TSS for Scgb2b22-ps:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr2196	Chr7:33305489-33305499 (-)	-17 bp