Gm9975 Gene Detail

Summary

• Symbol
  Gm9975
• Name
  predicted gene 9975

• Feature Type
  lncRNA gene
• IDs
  MGI:3642180
  NCBI Gene: 327988
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr11:86466894-86471300 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 51.82 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  235 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642180	lncRNA gene	Chr11:86466894-86471300 (-)
129S1/SvImJ	ENSMUSG00200020373	lncRNA gene	Chr11:83617131-83618767 (-)
A/J	ENSMUSG00195009266	lncRNA gene	Chr11:83471839-83473475 (-)
AKR/J	ENSMUSG00220012407	lncRNA gene	Chr11:83671425-83673061 (-)
BALB/cJ	ENSMUSG00180011513	lncRNA gene	Chr11:83661266-83662902 (-)
C3H/HeJ	ENSMUSG00175033298	lncRNA gene	Chr11:83618516-83620152 (-)
C57BL/6NJ	ENSMUSG00215030264	lncRNA gene	Chr11:83245092-83246728 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005017546	lncRNA gene	Chr11:83173219-83174856 (-)
CBA/J	ENSMUSG00210040489	lncRNA gene	Chr11:83436101-83437737 (-)
DBA/2J	ENSMUSG00185020106	lncRNA gene	Chr11:83752832-83754468 (-)
FVB/NJ	ENSMUSG00205023871	lncRNA gene	Chr11:83549222-83550858 (-)
JF1/MsJ	ENSUMUG00000031674	lncRNA gene	Chr11:84069866-84071503 (-)
LP/J	ENSMUSG00230029584	lncRNA gene	Chr11:84786149-84787785 (-)
NOD/ShiLtJ	ENSMUSG00190020771	lncRNA gene	Chr11:83761131-83762767 (-)
NZO/HlLtJ	ENSMUSG00225039932	lncRNA gene	Chr11:86896883-86898522 (-)
PWK/PhJ	ENSLUMG00010034798	lncRNA gene	Chr11:83578499-83580136 (-)
SPRET/EiJ	ENSMSPG00010030784	lncRNA gene	Chr11:84040092-84041736 (-)
WSB/EiJ	ENSIUOG00005008505	lncRNA gene	Chr11:83579981-83581617 (-)

Homology

• Gene Tree
  Gm9975
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  9 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Gene trapped
  2
• Targeted
  1
• Genomic Mutations
  2 involving Gm9975
• Find Mice (IMSR)
  0 strains or lines available

Expression

• cDNA Data
  6

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000120594 (Evidence)
• NCBI Gene
  327988

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120594	Ensembl Gene Model | MGI Sequence Detail	4407	C57BL/6J
transcript	ENSMUST00000365604	Ensembl | MGI Sequence Detail	1700	Not Applicable
polypeptide	Q8C7E3	UniProt | EBI | MGI Sequence Detail	123	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 6

  cDNA 6

References

• Summaries
  All 15

  Phenotypes 9
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52

TSS for Gm9975:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr109852	Chr11:86471258-86471263 (-)	39 bp
Tssr109851	Chr11:86468110-86468116 (-)	3,187 bp