Appbp2os Gene Detail

Summary

• Symbol
  Appbp2os
• Name
  amyloid beta precursor protein binding protein 2, opposite strand
• Synonyms
  D630032N06Rik

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:3603817
  NCBI Gene: 654810
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr11:85125992-85129130 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 51.34 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  153 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3603817	antisense lncRNA gene	Chr11:85125987-85154900 (+)
129S1/SvImJ	ENSMUSG00200020446	lncRNA gene	Chr11:82270489-82274020 (+)
A/J	ENSMUSG00195009419	lncRNA gene	Chr11:82125046-82128578 (+)
AKR/J	ENSMUSG00220012387	lncRNA gene	Chr11:82334458-82337966 (+)
BALB/cJ	ENSMUSG00180011500	lncRNA gene	Chr11:82316300-82319830 (+)
C3H/HeJ	ENSMUSG00175032305	lncRNA gene	Chr11:82271853-82275385 (+)
C57BL/6NJ	ENSMUSG00215030600	lncRNA gene	Chr11:81899950-81903479 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002670	antisense lncRNA gene	Chr11:80460288-80465123 (+)
CAST/EiJ	ENSTCUG00005046580	lncRNA gene	Chr11:81835033-81838532 (+)
CBA/J	ENSMUSG00210039927	lncRNA gene	Chr11:82089487-82093018 (+)
DBA/2J	ENSMUSG00185020264	lncRNA gene	Chr11:82415954-82419462 (+)
FVB/NJ	ENSMUSG00205021454	lncRNA gene	Chr11:82203989-82207518 (+)
JF1/MsJ	ENSUMUG00000031480	lncRNA gene	Chr11:82737396-82740904 (+)
LP/J	ENSMUSG00230030083	lncRNA gene	Chr11:83439542-83443073 (+)
NOD/ShiLtJ	ENSMUSG00190020058	lncRNA gene	Chr11:82416056-82419585 (+)
NZO/HlLtJ	ENSMUSG00225040222	lncRNA gene	Chr11:85549810-85553339 (+)
PWK/PhJ	ENSLUMG00010025354	lncRNA gene	Chr11:82236898-82240413 (+)
SPRET/EiJ	ENSMSPG00010029901	lncRNA gene	Chr11:82709040-82712590 (+)
WSB/EiJ	ENSIUOG00005007980	lncRNA gene	Chr11:82231203-82234733 (+)

Homology

• Gene Tree
  Appbp2os
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  11 phenotype references
  

• All Mutations and Alleles
  22
• Chemically induced (other)
  1
• Gene trapped
  20
• Targeted
  1
• Genomic Mutations
  2 involving Appbp2os
• Find Mice (IMSR)
  5 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  33
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000085628 (Evidence)
• NCBI Gene
  654810

Representative Sequences			Length	Strain/Species
genomic	654810	NCBI Gene Model | MGI Sequence Detail	3139	C57BL/6J
transcript	NR_028329	RefSeq | MGI Sequence Detail	657	C57BL/6
polypeptide	Q9CUT5	UniProt | EBI | MGI Sequence Detail	149	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 2

References

• Summaries
  All 24

  Phenotypes 11
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52