9230020A06Rik Gene Detail

Summary

• Symbol
  9230020A06Rik
• Name
  RIKEN cDNA 9230020A06 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3588244
  NCBI Gene: 619299
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:71407362-71464009 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 43.47 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1699 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3588244	lncRNA gene	Chr11:71403173-71464009 (+)
129S1/SvImJ	ENSMUSG00200050692	lncRNA gene	Chr11:68442839-68503656 (+)
A/J	ENSMUSG00195052998	lncRNA gene	Chr11:68374135-68434966 (+)
AKR/J	ENSMUSG00220054250	lncRNA gene	Chr11:68620933-68681449 (+)
BALB/cJ	ENSMUSG00180053926	lncRNA gene	Chr11:68542269-68603072 (+)
C3H/HeJ	ENSMUSG00175054487	lncRNA gene	Chr11:68489595-68550405 (+)
C57BL/6NJ	ENSMUSG00215055070	lncRNA gene	Chr11:68173155-68233970 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004763	lincRNA gene	Chr11:66257238-66317312 (+)
CAST/EiJ	ENSTCUG00005053669	lncRNA gene	Chr11:68039742-68100290 (+)
CBA/J	ENSMUSG00210054363	lncRNA gene	Chr11:68343661-68404453 (+)
DBA/2J	ENSMUSG00185056721	lncRNA gene	Chr11:68617513-68677830 (+)
FVB/NJ	ENSMUSG00205054030	lncRNA gene	Chr11:68463368-68524200 (+)
JF1/MsJ	ENSUMUG00000057153	lncRNA gene	Chr11:69016296-69076612 (+)
LP/J	ENSMUSG00230053827	lncRNA gene	Chr11:69653931-69714755 (+)
NOD/ShiLtJ	ENSMUSG00190054261	lncRNA gene	Chr11:68616151-68676664 (+)
NZO/HlLtJ	ENSMUSG00225040213	lncRNA gene	Chr11:71836011-71896818 (+)
PWK/PhJ	ENSLUMG00010053711	lncRNA gene	Chr11:68503015-68563562 (+)
SPRET/EiJ	ENSMSPG00010049101	lncRNA gene	Chr11:69050119-69111330 (+)
WSB/EiJ	ENSIUOG00005052968	lncRNA gene	Chr11:68570392-68631528 (+)

Homology

• Gene Tree
  9230020A06Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Targeted
  1
• Genomic Mutations
  2 involving 9230020A06Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  37
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000072753 (Evidence)
• NCBI Gene
  619299

Representative Sequences			Length	Strain/Species
genomic	619299	NCBI Gene Model | MGI Sequence Detail	56648	C57BL/6J
transcript	NR_152165	RefSeq | MGI Sequence Detail	2051	C57BL/6
polypeptide	Q3UW25	UniProt | EBI | MGI Sequence Detail	193	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 17

  Phenotypes 8
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52

TSS for 9230020A06Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr102812	Chr11:71407341-71407367 (+)	-8 bp