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Zkscan16 Gene Detail
Summary
  • Symbol
    Zkscan16
  • Name
    zinc finger with KRAB and SCAN domains 16
  • Synonyms
    Zfp483
  • Feature Type
    protein coding gene
  • IDs
    MGI:3510405
    NCBI Gene: 100041581
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:58943628-58958355 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 32.36 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    198 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3510405
 protein coding gene Chr4:58943568-58962624 (+)
129S1/SvImJ MGP_129S1SvImJ_G0028328
 protein coding gene Chr4:57815316-57834766 (+)
A/J MGP_AJ_G0028289
 protein coding gene Chr4:55592816-55607450 (+)
AKR/J MGP_AKRJ_G0028238
 protein coding gene Chr4:57158997-57174801 (+)
BALB/cJ MGP_BALBcJ_G0028308
 protein coding gene Chr4:55770717-55785552 (+)
C3H/HeJ MGP_C3HHeJ_G0028029
 protein coding gene Chr4:57620233-57635106 (+)
C57BL/6NJ MGP_C57BL6NJ_G0028749
 protein coding gene Chr4:59845241-59861115 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0026055
 protein coding gene Chr4:52337916-52352487 (+)
CAST/EiJ MGP_CASTEiJ_G0027467
 protein coding gene Chr4:57390622-57406927 (+)
CBA/J MGP_CBAJ_G0027994
 protein coding gene Chr4:61882380-61897878 (+)
DBA/2J MGP_DBA2J_G0028144
 protein coding gene Chr4:55503460-55518374 (+)
FVB/NJ MGP_FVBNJ_G0028111
 protein coding gene Chr4:54711663-54726413 (+)
LP/J MGP_LPJ_G0028243
 protein coding gene Chr4:57905664-57925774 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0028135
 protein coding gene Chr4:65008329-65023877 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0028785
 protein coding gene Chr4:57340230-57355446 (+)
PWK/PhJ MGP_PWKPhJ_G0027192
 protein coding gene Chr4:55518618-55537781 (+)
SPRET/EiJ MGP_SPRETEiJ_G0027020
 protein coding gene Chr4:56671184-56685663 (+)
WSB/EiJ MGP_WSBEiJ_G0027545
 protein coding gene Chr4:57322911-57337619 (+)



Homology
more
  • Human Ortholog
    ZNF483, zinc finger protein 483
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    ZNF483, zinc finger protein 483
  • Synonyms
    ZKSCAN16, ZSCAN48
  • Links
    NCBI Gene ID: 158399
    neXtProt AC: NX_Q8TF39
    UniProt: Q8TF39

  • Chr Location
    9q31.3; chr9:111525159-111578136 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    4
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    829
  • Tissues
    123
  • cDNA Data
    5
  • Literature Summary
    3
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000038630 Ensembl Gene Model | MGI Sequence Detail 14728 C57BL/6J ±  kb
transcript ENSMUST00000107554 Ensembl | MGI Sequence Detail 2794 Not Applicable  
polypeptide ENSMUSP00000103178 Ensembl | MGI Sequence Detail 728 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 6
    cDNA 5
    Primer pair 1

    Microarray probesets 1
References
more
  • Summaries
    All 18
    Developmental Gene Expression 3
    Gene Ontology 1
    Phenotypes 2
  • Earliest
    J:91257 Gray PA, et al., Mouse Brain Organization Revealed Through Direct Genome-Scale TF Expression Analysis. Science. 2004 Dec 24;306(5705):2255-2257
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory