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Glcci1 Gene Detail
Summary
  • Symbol
    Glcci1
  • Name
    glucocorticoid induced transcript 1
  • Synonyms
    2310047L21Rik, A130036A18Rik, Fam117c, GIG18, Tssn1
  • Feature Type
    protein coding gene
  • IDs
    MGI:2179717
    NCBI Gene: 170772
  • Alliance
    gene page
  • Transcription Start Sites
    17 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:8509600-8597548 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 4.38 cM, cytoband A1
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    662 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2179717
 protein coding gene Chr6:8509600-8597549 (+)
129S1/SvImJ MGP_129S1SvImJ_G0030451
 protein coding gene Chr6:5449019-5528356 (+)
A/J MGP_AJ_G0030424
 protein coding gene Chr6:5272213-5351294 (+)
AKR/J MGP_AKRJ_G0030351
 protein coding gene Chr6:5452019-5545855 (+)
BALB/cJ MGP_BALBcJ_G0030433
 protein coding gene Chr6:5230551-5317643 (+)
C3H/HeJ MGP_C3HHeJ_G0030147
 protein coding gene Chr6:5343673-5432249 (+)
C57BL/6NJ MGP_C57BL6NJ_G0030888
 protein coding gene Chr6:5607367-5700150 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0028099
 protein coding gene Chr6:4769693-4846388 (+)
CAST/EiJ MGP_CASTEiJ_G0029548
 protein coding gene Chr6:5331211-5416648 (+)
CBA/J MGP_CBAJ_G0030125
 protein coding gene Chr6:5747001-5847163 (+)
DBA/2J MGP_DBA2J_G0030269
 protein coding gene Chr6:5197113-5283607 (+)
FVB/NJ MGP_FVBNJ_G0030223
 protein coding gene Chr6:5168204-5252272 (+)
LP/J MGP_LPJ_G0030356
 protein coding gene Chr6:5416121-5508620 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0030259
 protein coding gene Chr6:5837669-5953540 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0030918
 protein coding gene Chr6:5329527-5418650 (+)
PWK/PhJ MGP_PWKPhJ_G0029263
 protein coding gene Chr6:5090342-5170148 (+)
SPRET/EiJ MGP_SPRETEiJ_G0029099
 protein coding gene Chr6:5387013-5468653 (+)
WSB/EiJ MGP_WSBEiJ_G0029625
 protein coding gene Chr6:5325679-5411990 (+)



Homology
more
  • Human Ortholog
    GLCCI1, glucocorticoid induced 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    GLCCI1, glucocorticoid induced 1
  • Synonyms
    FAM117C, GCTR, GIG18, TSSN1
  • Links
    NCBI Gene ID: 113263
    neXtProt AC: NX_Q86VQ1
    UniProt: Q86VQ1

  • Chr Location
    7p21.3; chr7:7968796-8094272 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    6
  • GO References
    4
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    840
  • Tissues
    47
  • cDNA Data
    24
  • Literature Summary
    13
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000029638 Ensembl Gene Model | MGI Sequence Detail 87949 C57BL/6J ±  kb
transcript ENSMUST00000064285 Ensembl | MGI Sequence Detail 6200 Not Applicable  
polypeptide ENSMUSP00000069444 Ensembl | MGI Sequence Detail 538 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 32
    cDNA 26
    Primer pair 5
    Other 1

    Microarray probesets 6
Other
Accession IDs
less
MGI:1923716, MGI:2384658, MGI:2442244
References
more
  • Summaries
    All 39
    Developmental Gene Expression 13
    Gene Ontology 4
    Phenotypes 2
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:333201 Takada M, et al., Involvement of GLCCI1 in mouse spermatogenesis. FASEB J. 2023 Jan;37(1):e22680
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/09/2024
MGI 6.23 		The Jackson Laboratory