Rab11fip4os2 Gene Detail

Summary

• Symbol
  Rab11fip4os2
• Name
  RAB11 family interacting protein 4 (class II), opposite strand 2
• Synonyms
  1700020F10Rik, 4930542H20Rik

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:1925439
  NCBI Gene: 72218
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:79561199-79565912 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 46.97 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  246 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1925439	antisense lncRNA gene	Chr11:79561186-79565968 (-)
129S1/SvImJ	ENSMUSG00200052176	lncRNA gene	Chr11:76678333-76683089 (-)
A/J	ENSMUSG00195045401	lncRNA gene	Chr11:76557208-76561964 (-)
AKR/J	ENSMUSG00220049174	lncRNA gene	Chr11:76791365-76796177 (-)
BALB/cJ	ENSMUSG00180042804	lncRNA gene	Chr11:76752375-76757188 (-)
C3H/HeJ	ENSMUSG00175043019	lncRNA gene	Chr11:76722119-76726875 (-)
C57BL/6NJ	ENSMUSG00215043306	lncRNA gene	Chr11:76339148-76343904 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002662	antisense lncRNA gene	Chr11:74623077-74627713 (-)
CAST/EiJ	ENSTCUG00005045967	lncRNA gene	Chr11:76245409-76250351 (-)
CBA/J	ENSMUSG00210047724	lncRNA gene	Chr11:76545748-76550504 (-)
DBA/2J	ENSMUSG00185040166	lncRNA gene	Chr11:76803661-76808417 (-)
FVB/NJ	ENSMUSG00205047976	lncRNA gene	Chr11:76641265-76646071 (-)
JF1/MsJ	ENSUMUG00000054245	lncRNA gene	Chr11:77193201-77199661 (-)
LP/J	ENSMUSG00230049893	lncRNA gene	Chr11:77833963-77838719 (-)
NOD/ShiLtJ	ENSMUSG00190048737	lncRNA gene	Chr11:76850574-76855330 (-)
NZO/HlLtJ	ENSMUSG00225040152	lncRNA gene	Chr11:80001473-80006229 (-)
PWK/PhJ	ENSLUMG00010025035	lncRNA gene	Chr11:76716324-76721501 (-)
SPRET/EiJ	ENSMSPG00010044251	lncRNA gene	Chr11:77112305-77117171 (-)
WSB/EiJ	ENSIUOG00005037730	lncRNA gene	Chr11:76692535-76697369 (-)

Homology

• Gene Tree
  Rab11fip4os2
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Targeted
  1
• Genomic Mutations
  2 involving Rab11fip4os2
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  33
• RefSeq
  1

• Ensembl
  ENSMUSG00000086569 (Evidence)
• NCBI Gene
  72218

Representative Sequences			Length	Strain/Species
genomic	72218	NCBI Gene Model | MGI Sequence Detail	4714	C57BL/6J
transcript	NR_045898	RefSeq | MGI Sequence Detail	357	C57BL/6

Molecular
Reagents

• All nucleic 2

  cDNA 2

Other
Accession IDs

MGI:1919468

References

• Summaries
  All 17

  Phenotypes 8
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52

TSS for Rab11fip4os2:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr109523	Chr11:79565951-79565956 (-)	-42 bp