6720407P12Rik Gene Detail

Summary

• Symbol
  6720407P12Rik
• Name
  RIKEN cDNA 6720407P12 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1925140
  NCBI Gene: 77890
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:69692952-69693780 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  52 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1925140	lncRNA gene	Chr11:69692952-69693780 (-)
129S1/SvImJ	ENSMUSG00200049691	lncRNA gene	Chr11:66639609-66640437 (-)
A/J	ENSMUSG00195052571	lncRNA gene	Chr11:66666592-66667420 (-)
AKR/J	ENSMUSG00220054275	lncRNA gene	Chr11:66774043-66774872 (-)
BALB/cJ	ENSMUSG00180054155	lncRNA gene	Chr11:66735250-66736079 (-)
C3H/HeJ	ENSMUSG00175054534	lncRNA gene	Chr11:66685463-66686291 (-)
C57BL/6NJ	ENSMUSG00215055144	lncRNA gene	Chr11:66462312-66463140 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005053774	lncRNA gene	Chr11:66226448-66227276 (-)
CBA/J	ENSMUSG00210054439	lncRNA gene	Chr11:66539547-66540375 (-)
DBA/2J	ENSMUSG00185056736	lncRNA gene	Chr11:66739687-66740515 (-)
FVB/NJ	ENSMUSG00205053913	lncRNA gene	Chr11:66631888-66632716 (-)
JF1/MsJ	ENSUMUG00000057033	lncRNA gene	Chr11:67138110-67138938 (-)
LP/J	ENSMUSG00230053738	lncRNA gene	Chr11:67849970-67850798 (-)
NOD/ShiLtJ	ENSMUSG00190054208	lncRNA gene	Chr11:66769473-66770301 (-)
NZO/HlLtJ	ENSMUSG00225048523	lncRNA gene	Chr11:70032065-70032893 (-)
PWK/PhJ	ENSLUMG00010053585	lncRNA gene	Chr11:66653547-66654375 (-)
SPRET/EiJ	ENSMSPG00010049485	lncRNA gene	Chr11:67384466-67385296 (-)
WSB/EiJ	ENSIUOG00005052809	lncRNA gene	Chr11:66669011-66669839 (-)

Homology

• Gene Tree
  6720407P12Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving 6720407P12Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• cDNA Data
  1

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000121226 (Evidence)
• NCBI Gene
  77890

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121226	Ensembl Gene Model | MGI Sequence Detail	829	C57BL/6J
transcript	ENSMUST00000247513	Ensembl | MGI Sequence Detail	829	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 10

  Phenotypes 5
• Earliest
  J:56548 Zheng B, et al., Engineering a mouse balancer chromosome. Nat Genet. 1999 Aug;22(4):375-8
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52

TSS for 6720407P12Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr108841	Chr11:69693716-69693767 (-)	38 bp