C030013E06Rik Gene Detail

Summary

• Symbol
  C030013E06Rik
• Name
  RIKEN cDNA C030013E06 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1924671
  NCBI Gene: 77421
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr11:102210585-102214107 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  173 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1924671	lncRNA gene	Chr11:102210585-102214107 (-)
129S1/SvImJ	ENSMUSG00200053197	lncRNA gene	Chr11:99496724-99497240 (-)
A/J	ENSMUSG00195053159	lncRNA gene	Chr11:99192973-99193486 (-)
AKR/J	ENSMUSG00220052561	lncRNA gene	Chr11:99412137-99412651 (-)
BALB/cJ	ENSMUSG00180052636	lncRNA gene	Chr11:99544370-99544886 (-)
C3H/HeJ	ENSMUSG00175052807	lncRNA gene	Chr11:99470235-99470750 (-)
C57BL/6NJ	ENSMUSG00215054462	lncRNA gene	Chr11:99032316-99032832 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005051174	lncRNA gene	Chr11:98967881-98968398 (-)
CBA/J	ENSMUSG00210053656	lncRNA gene	Chr11:99178139-99178653 (-)
DBA/2J	ENSMUSG00185053098	lncRNA gene	Chr11:99520097-99520613 (-)
FVB/NJ	ENSMUSG00205050466	lncRNA gene	Chr11:99363031-99363545 (-)
JF1/MsJ	ENSUMUG00000055798	lncRNA gene	Chr11:99781783-99782297 (-)
LP/J	ENSMUSG00230051069	lncRNA gene	Chr11:100572644-100573160 (-)
NOD/ShiLtJ	ENSMUSG00190052757	lncRNA gene	Chr11:99558679-99559194 (-)
NZO/HlLtJ	ENSMUSG00225053436	lncRNA gene	Chr11:102595333-102595847 (-)
PWK/PhJ	ENSLUMG00010052377	lncRNA gene	Chr11:99315435-99315960 (-)
SPRET/EiJ	ENSMSPG00010050893	lncRNA gene	Chr11:99812499-99813010 (-)
WSB/EiJ	ENSIUOG00005051011	lncRNA gene	Chr11:99313630-99314142 (-)

Homology

• Gene Tree
  C030013E06Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving C030013E06Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• cDNA Data
  2

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000120603 (Evidence)
• NCBI Gene
  77421

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120603	Ensembl Gene Model | MGI Sequence Detail	3523	C57BL/6J
transcript	ENSMUST00000244496	Ensembl | MGI Sequence Detail	1195	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 11

  Phenotypes 5
• Earliest
  J:56548 Zheng B, et al., Engineering a mouse balancer chromosome. Nat Genet. 1999 Aug;22(4):375-8
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52