B230206L02Rik Gene Detail

Summary

• Symbol
  B230206L02Rik
• Name
  RIKEN cDNA B230206L02 gene
• Synonyms
  Gm11519

• Feature Type
  lncRNA gene
• IDs
  MGI:1924598
  NCBI Gene: 100039440
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr11:94024282-94046596 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 58.90 cM

Strain
Comparison

• SNPs within 2kb
  661 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1924598	lncRNA gene	Chr11:94020712-94046612 (+)
129S1/SvImJ	ENSMUSG00200020602	lncRNA gene	Chr11:91272277-91294651 (+)
A/J	ENSMUSG00195009917	lncRNA gene	Chr11:91004878-91027402 (+)
AKR/J	ENSMUSG00220012274	lncRNA gene	Chr11:91257194-91279719 (+)
BALB/cJ	ENSMUSG00180011956	lncRNA gene	Chr11:91241443-91263818 (+)
C3H/HeJ	ENSMUSG00175032380	lncRNA gene	Chr11:91264440-91286962 (+)
C57BL/6NJ	ENSMUSG00215030946	lncRNA gene	Chr11:90838765-90861126 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013330	unclassified non-coding RNA gene	Chr11:89855284-89878245 (+)
CAST/EiJ	ENSTCUG00005017636	lncRNA gene	Chr11:90689734-90712117 (+)
CBA/J	ENSMUSG00210041635	lncRNA gene	Chr11:90968033-90990546 (+)
DBA/2J	ENSMUSG00185020757	lncRNA gene	Chr11:91288589-91310950 (+)
FVB/NJ	ENSMUSG00205023204	lncRNA gene	Chr11:91178882-91201449 (+)
JF1/MsJ	ENSUMUG00000056442	lncRNA gene	Chr11:91635743-91658259 (+)
LP/J	ENSMUSG00230051382	lncRNA gene	Chr11:92355592-92377965 (+)
NOD/ShiLtJ	ENSMUSG00190020817	lncRNA gene	Chr11:91335295-91357670 (+)
NZO/HlLtJ	ENSMUSG00225053237	lncRNA gene	Chr11:94396071-94418615 (+)
PWK/PhJ	ENSLUMG00010035187	lncRNA gene	Chr11:91168531-91191102 (+)
SPRET/EiJ	ENSMSPG00010029984	lncRNA gene	Chr11:91673745-91696085 (+)
WSB/EiJ	ENSIUOG00005008444	lncRNA gene	Chr11:91117762-91140308 (+)

Homology

• Gene Tree
  B230206L02Rik
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  267
• Gene trapped
  264
• Targeted
  3
• Genomic Mutations
  3 involving B230206L02Rik
• Find Mice (IMSR)
  18 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  5

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  108
• RefSeq
  3

• Ensembl
  ENSMUSG00000086003 (Evidence)
• NCBI Gene
  100039440

Representative Sequences			Length	Strain/Species
genomic	100039440	NCBI Gene Model | MGI Sequence Detail	22315	C57BL/6J
transcript	NR_167699	RefSeq | MGI Sequence Detail	718	C57BL/6

Molecular
Reagents

• All nucleic 5

  cDNA 5

Other
Accession IDs

MGI:3650305

References

• Summaries
  All 19

  Diseases 1

  Phenotypes 8
• Earliest
  J:56548 Zheng B, et al., Engineering a mouse balancer chromosome. Nat Genet. 1999 Aug;22(4):375-8
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52

TSS for B230206L02Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr3643	Chr11:94024252-94024295 (+)	-8 bp
Tssr104175	Chr11:94024305-94024316 (+)	29 bp
Tssr104176	Chr11:94028497-94028508 (+)	4,221 bp
Tssr104177	Chr11:94030743-94030746 (+)	6,463 bp