Slfn5os MGI Mouse Gene Detail - MGI:1923642 - schlafen 5, opposite strand

Symbol

Slfn5os
Name

schlafen 5, opposite strand
Synonyms

1700003F17Rik

Feature Type

antisense lncRNA gene

BioType Conflict
IDs

MGI:1923642
NCBI Gene: 76392
Alliance

genome feature page
Transcription Start Sites

3 TSS

Sequence Map

Chr11:82833167-82851507 bp, - strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 11, 50.30 cM, cytoband B5
Mapping Data

2 experiments

SNPs within 2kb

292 from dbSNP Build 142
Strain Annotations

31

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1923642	antisense lncRNA gene	Chr11:82824893-82851536 (-)
129S1/SvImJ	ENSMUSG00200048516	protein coding gene	Chr11:79956802-79975006 (-)
129S1/SvImJ	ENSMUSG00200051936	lncRNA gene	Chr11:79956598-79975013 (-)
A/J	ENSMUSG00195039909	protein coding gene	Chr11:79822883-79841093 (-)
A/J	ENSMUSG00195045795	lncRNA gene	Chr11:79822679-79841100 (-)
AKR/J	ENSMUSG00220041881	protein coding gene	Chr11:80061502-80079841 (-)
AKR/J	ENSMUSG00220048581	lncRNA gene	Chr11:80061508-80079851 (-)
BALB/cJ	ENSMUSG00180044053	lncRNA gene	Chr11:80021815-80040158 (-)
BALB/cJ	ENSMUSG00180037367	protein coding gene	Chr11:80021809-80040148 (-)
C3H/HeJ	ENSMUSG00175028553	protein coding gene	Chr11:79993243-80011449 (-)
C3H/HeJ	ENSMUSG00175039507	lncRNA gene	Chr11:79993040-80011456 (-)
C57BL/6NJ	ENSMUSG00215040667	protein coding gene	Chr11:79617121-79635460 (-)
C57BL/6NJ	ENSMUSG00215042828	lncRNA gene	Chr11:79617127-79635470 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002669	antisense lncRNA gene	Chr11:77952172-77970538 (-)
CAST/EiJ	ENSTCUG00005046115	lncRNA gene	Chr11:79528867-79547344 (-)
CBA/J	ENSMUSG00210047383	lncRNA gene	Chr11:79810708-79829128 (-)
CBA/J	ENSMUSG00210045945	protein coding gene	Chr11:79810911-79829121 (-)
DBA/2J	ENSMUSG00185042232	lncRNA gene	Chr11:80094905-80113226 (-)
DBA/2J	ENSMUSG00185038214	protein coding gene	Chr11:80094899-80113216 (-)
FVB/NJ	ENSMUSG00205026561	protein coding gene	Chr11:79897565-79915911 (-)
FVB/NJ	ENSMUSG00205048684	lncRNA gene	Chr11:79897571-79915921 (-)
JF1/MsJ	ENSUMUG00000053346	lncRNA gene	Chr11:80469887-80488219 (-)
LP/J	ENSMUSG00230029096	protein coding gene	Chr11:81112208-81130411 (-)
LP/J	ENSMUSG00230029479	lncRNA gene	Chr11:81112005-81130418 (-)
NOD/ShiLtJ	ENSMUSG00190047306	lncRNA gene	Chr11:80133468-80151809 (-)
NOD/ShiLtJ	ENSMUSG00190032867	protein coding gene	Chr11:80133462-80151799 (-)
NZO/HlLtJ	ENSMUSG00225039625	lncRNA gene	Chr11:83295996-83314678 (-)
NZO/HlLtJ	ENSMUSG00225038824	protein coding gene	Chr11:83295990-83314668 (-)
PWK/PhJ	ENSLUMG00010026512	lncRNA gene	Chr11:79991527-80009896 (-)
SPRET/EiJ	ENSMSPG00010044431	lncRNA gene	Chr11:80417427-80435723 (-)
WSB/EiJ	ENSIUOG00005036912	lncRNA gene	Chr11:79970968-79989639 (-)

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Gene Tree

Slfn5os

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Phenotype Summary

8 phenotype references

All Mutations and Alleles

2
Chemically induced (other)

1
Targeted

1
Genomic Mutations

2 involving Slfn5os
Find Mice (IMSR)

0 strains or lines available

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

597
cDNA Data

1

Tissue x Stage Matrix

Other Mouse Links

GEO

Expression Atlas

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All Sequences

52
RefSeq

1
UniProt

1

Ensembl

ENSMUSG00000086327 (Evidence)
NCBI Gene

76392

			Length	Strain/Species	Flank
genomic	76392	NCBI Gene Model \| MGI Sequence Detail	18341	C57BL/6J	± kb
transcript	NR_045932	RefSeq \| MGI Sequence Detail	574	C57BL/6
polypeptide	Q9DAQ2	UniProt \| EBI \| MGI Sequence Detail	101	Not Applicable

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UniProt

1 Sequence

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All nucleic 1

cDNA 1

Microarray probesets 2

Summaries

All 21

Phenotypes 8
Earliest

J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
Latest

J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52

TSS for Slfn5os:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr109599	Chr11:82851519-82851524 (-)	-15 bp
Tssr109598	Chr11:82851499-82851509 (-)	3 bp
Tssr109597	Chr11:82851474-82851497 (-)	21 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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