About   Help   FAQ
Ccdc18 Gene Detail
Summary
  • Symbol
    Ccdc18
  • Name
    coiled-coil domain containing 18
  • Synonyms
    1700021E15Rik, 4932411G06Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1922974
    NCBI Gene: 73254
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:108280741-108381494 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
  • Genetic Map
    Chromosome 5, 52.55 cM, cytoband E5
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    2242 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1922974
protein coding gene Chr5:108280583-108388378 (+)
129S1/SvImJ MGP_129S1SvImJ_G0029851
protein coding gene Chr5:110200909-110319280 (+)
A/J MGP_AJ_G0029815
protein coding gene Chr5:105981341-106088569 (+)
AKR/J MGP_AKRJ_G0029760
protein coding gene Chr5:109395393-109503568 (+)
BALB/cJ MGP_BALBcJ_G0029827
protein coding gene Chr5:107117196-107227612 (+)
C3H/HeJ MGP_C3HHeJ_G0029549
protein coding gene Chr5:109868086-109982506 (+)
C57BL/6NJ MGP_C57BL6NJ_G0030281
protein coding gene Chr5:114708158-114834676 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0027515
protein coding gene Chr5:101029458-101127679 (+)
CAST/EiJ MGP_CASTEiJ_G0028963
protein coding gene Chr5:108781933-108895364 (+)
CBA/J MGP_CBAJ_G0029517
protein coding gene Chr5:118584734-118718303 (+)
DBA/2J MGP_DBA2J_G0029663
protein coding gene Chr5:106109625-106225121 (+)
FVB/NJ MGP_FVBNJ_G0029620
protein coding gene Chr5:104837622-104938371 (+)
LP/J MGP_LPJ_G0029751
protein coding gene Chr5:110797392-110917768 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0029652
protein coding gene Chr5:123474309-123606273 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0030315
protein coding gene Chr5:108962371-109073068 (+)
PWK/PhJ MGP_PWKPhJ_G0028676
protein coding gene Chr5:104925905-105038423 (+)
SPRET/EiJ MGP_SPRETEiJ_G0028514
protein coding gene Chr5:106483568-106589025 (+)
WSB/EiJ MGP_WSBEiJ_G0029036
protein coding gene Chr5:109268532-109383052 (+)



Homology
more
  • Human Ortholog
    CCDC18, coiled-coil domain containing 18
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CCDC18, coiled-coil domain containing 18
  • Synonyms
    NY-SAR-41
  • Links
    NCBI Gene ID: 343099
    neXtProt AC: NX_Q5T9S5
    UniProt: Q5T9S5

  • Chr Location
    1p22.1; chr1:93179913-93278730 (+)  GRCh38

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotypes from 1 allele in 1 genetic background
    16 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
  • Comparison Matrix
  • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000056531 Ensembl Gene Model | MGI Sequence Detail 100754 C57BL/6J ±  kb
    transcript ENSMUST00000047677 Ensembl | MGI Sequence Detail 5336 Not Applicable  
    polypeptide ENSMUSP00000036507 Ensembl | MGI Sequence Detail 1455 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 20
      cDNA 20

      Microarray probesets 4
    Other
    Accession IDs
    less
    MGI:1920504
    References
    more
    • Summaries
      All 39
      Gene Ontology 3
      Phenotypes 16
    • Earliest
      J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
    Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
    Send questions and comments to User Support.
    last database update
    09/24/2024
    MGI 6.24
    The Jackson Laboratory