4930556N13Rik Gene Detail

Summary

• Symbol
  4930556N13Rik
• Name
  RIKEN cDNA 4930556N13 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1922535
  NCBI Gene: 75285
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr11:88742430-88772221 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 54.34 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  310 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922535	lncRNA gene	Chr11:88742430-88772450 (+)
129S1/SvImJ	ENSMUSG00200020476	lncRNA gene	Chr11:85886995-85916874 (+)
A/J	ENSMUSG00195009597	lncRNA gene	Chr11:85742010-85771888 (+)
AKR/J	ENSMUSG00220012241	lncRNA gene	Chr11:85941716-85971604 (+)
BALB/cJ	ENSMUSG00180011540	lncRNA gene	Chr11:85948036-85977951 (+)
C3H/HeJ	ENSMUSG00175032759	lncRNA gene	Chr11:85888443-85918333 (+)
C57BL/6NJ	ENSMUSG00215033313	lncRNA gene	Chr11:85519712-85549503 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002678	antisense lncRNA gene	Chr11:84105982-84136213 (+)
CAST/EiJ	ENSTCUG00005017310	lncRNA gene	Chr11:85440493-85470297 (+)
CBA/J	ENSMUSG00210041259	lncRNA gene	Chr11:85706001-85735889 (+)
DBA/2J	ENSMUSG00185020139	lncRNA gene	Chr11:86022176-86052053 (+)
FVB/NJ	ENSMUSG00205021657	lncRNA gene	Chr11:85901761-85931651 (+)
JF1/MsJ	ENSUMUG00000026403	lncRNA gene	Chr11:86350941-86380932 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190020944	lncRNA gene	Chr11:86054005-86083887 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010034009	lncRNA gene	Chr11:85891186-85919361 (+)
SPRET/EiJ	ENSMSPG00010028237	lncRNA gene	Chr11:86303871-86333060 (+)
WSB/EiJ	ENSIUOG00005008207	lncRNA gene	Chr11:85867603-85897480 (+)

Homology

• Gene Tree
  4930556N13Rik
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  12 phenotype references
  

• All Mutations and Alleles
  14
• Chemically induced (other)
  1
• Endonuclease-mediated
  1
• Gene trapped
  9
• Targeted
  3
• Genomic Mutations
  4 involving 4930556N13Rik
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000092399 (Evidence)
• NCBI Gene
  75285

Representative Sequences			Length	Strain/Species
genomic	75285	NCBI Gene Model | MGI Sequence Detail	29792	C57BL/6J
transcript	NR_126433	RefSeq | MGI Sequence Detail	1034	C57BL/6

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 21

  Diseases 1

  Phenotypes 12
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52

TSS for 4930556N13Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr104052	Chr11:88742446-88742449 (+)	18 bp
Tssr104053	Chr11:88742467-88742478 (+)	43 bp