Rhox2a Gene Detail

Summary

• Symbol
  Rhox2a
• Name
  reproductive homeobox 2A
• Synonyms
  4930539I12Rik, Rhox2

• Feature Type
  protein coding gene
• IDs
  MGI:1922449
  NCBI Gene: 75199
• Member of
  Rhox cluster
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  ChrX:36508645-36513343 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 21.67 cM
• Mapping Data
  3 experiments

Strain
Comparison

• SNPs within 2kb
  8 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922449	protein coding gene	ChrX:36508629-36513343 (+)
129S1/SvImJ	ENSMUSG00200021641	protein coding gene	ChrX:20619391-20623988 (+)
129S1/SvImJ	ENSMUSG00200021354	protein coding gene	ChrX:20643369-20654730 (+)
A/J	ENSMUSG00195024341	protein coding gene	ChrX:23290042-23294642 (+)
A/J	ENSMUSG00195024376	protein coding gene	ChrX:23334206-23345563 (+)
AKR/J	ENSMUSG00220023689	protein coding gene	ChrX:20401463-20406175 (+)
BALB/cJ	ENSMUSG00180012506	protein coding gene	ChrX:21049240-21060603 (+)
C3H/HeJ	ENSMUSGG00175055001	protein coding gene	ChrX:24073683-24085038 (+)
C57BL/6NJ	ENSMUSG00215021292	protein coding gene	ChrX:21041661-21053022 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005030046	protein coding gene	ChrX:22942536-22947321 (+)
CBA/J	ENSMUSG00210031329	protein coding gene	ChrX:21388013-21399368 (+)
DBA/2J	ENSMUSG00185023108	protein coding gene	ChrX:31908864-31913576 (+)
DBA/2J	ENSMUSG00185023048	protein coding gene	ChrX:31867256-31871968 (+)
FVB/NJ	ENSMUSG00205020149	protein coding gene	ChrX:19962206-19966918 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230011281	protein coding gene	ChrX:38400984-38403587 (+)
LP/J	ENSMUSG00230011358	protein coding gene	ChrX:38359453-38364163 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225039089	protein coding gene	ChrX:43607451-43610054 (+)
NZO/HlLtJ	ENSMUSG00225039059	protein coding gene	ChrX:43565910-43570620 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005036607	protein coding gene	ChrX:21476390-21481102 (+)

Homology

• MGI Vertebrate Homology
  Rhox2a stringent orthology
  1 mouse;1 rat
  
• Gene Tree
  Rhox2a
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving Rhox2a
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  621
• Tissues
  15
• cDNA Data
  6
• Literature Summary
  5

Images

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  36
• RefSeq
  4
• UniProt
  1
• CCDS
  CCDS30075.1, CCDS81118.1

• Ensembl
  ENSMUSG00000051827 (Evidence)
• NCBI Gene
  75199

Representative Sequences			Length	Strain/Species
genomic	75199	NCBI Gene Model | MGI Sequence Detail	4699	C57BL/6J
transcript	NM_001310503	RefSeq | MGI Sequence Detail	832	C57BL/6
polypeptide	NP_083479	RefSeq | MGI Sequence Detail	191	C57BL/6

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 6

  cDNA 6

  
  

  Microarray probesets 2

References

• Summaries
  All 27

  Developmental Gene Expression 5

  Phenotypes 3
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:306454 Tan K, et al., The Rhox gene cluster suppresses germline LINE1 transposition. Proc Natl Acad Sci U S A. 2021 Jun 8;118(23):e2024785118