4930405D11Rik Gene Detail

Summary

• Symbol
  4930405D11Rik
• Name
  RIKEN cDNA 4930405D11 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1921172
  NCBI Gene: 73922
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr11:90695517-90785978 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 56.10 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  2770 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1921172	lncRNA gene	Chr11:90695513-90785978 (+)
129S1/SvImJ	ENSMUSG00200020758	lncRNA gene	Chr11:87882798-87968382 (+)
A/J	ENSMUSG00195009358	lncRNA gene	Chr11:87681867-87767469 (+)
AKR/J	ENSMUSG00220012317	lncRNA gene	Chr11:87881642-87967243 (+)
BALB/cJ	ENSMUSG00180011637	lncRNA gene	Chr11:87899221-87984811 (+)
C3H/HeJ	ENSMUSG00175034238	lncRNA gene	Chr11:87828336-87913925 (+)
C57BL/6NJ	ENSMUSG00215029305	lncRNA gene	Chr11:87506637-87597708 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004795	lincRNA gene	Chr11:86038865-86119173 (+)
CAST/EiJ	ENSTCUG00005017682	lncRNA gene	Chr11:87371053-87453330 (+)
CBA/J	ENSMUSG00210040092	lncRNA gene	Chr11:87645675-87731244 (+)
DBA/2J	ENSMUSG00185020895	lncRNA gene	Chr11:87961934-88047531 (+)
FVB/NJ	ENSMUSG00205022804	lncRNA gene	Chr11:87839284-87930093 (+)
JF1/MsJ	ENSUMUG00000029319	lncRNA gene	Chr11:88302273-88384515 (+)
LP/J	ENSMUSG00230030591	lncRNA gene	Chr11:88995366-89080944 (+)
NOD/ShiLtJ	ENSMUSG00190021056	lncRNA gene	Chr11:87984088-88069784 (+)
NZO/HlLtJ	ENSMUSG00225039873	lncRNA gene	Chr11:91091929-91177740 (+)
PWK/PhJ	ENSLUMG00010033425	lncRNA gene	Chr11:87827280-87908462 (+)
SPRET/EiJ	ENSMSPG00010029007	lncRNA gene	Chr11:88229728-88310172 (+)
WSB/EiJ	ENSIUOG00005008095	lncRNA gene	Chr11:87804163-87895069 (+)

Homology

• Gene Tree
  4930405D11Rik
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  10 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  1
• Endonuclease-mediated
  1
• Targeted
  3
• Genomic Mutations
  4 involving 4930405D11Rik
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  58
• RefSeq
  2

• Ensembl
  ENSMUSG00000085940 (Evidence)
• NCBI Gene
  73922

Representative Sequences			Length	Strain/Species
genomic	73922	NCBI Gene Model | MGI Sequence Detail	90462	C57BL/6J
transcript	NR_168485	RefSeq | MGI Sequence Detail	761	C57BL/6

Molecular
Reagents

• All nucleic 4

  cDNA 4

References

• Summaries
  All 19

  Diseases 1

  Phenotypes 10
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52

TSS for 4930405D11Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr104130	Chr11:90695508-90695525 (+)	0 bp
Tssr104131	Chr11:90774147-90774151 (+)	78,632 bp