Scpep1os Gene Detail

Summary

• Symbol
  Scpep1os
• Name
  serine carboxypeptidase 1, opposite strand
• Synonyms
  4930405P13Rik

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:1921171
  NCBI Gene: 73921
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:88796754-88826887 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 54.34 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  512 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1921171	antisense lncRNA gene	Chr11:88796754-88826887 (+)
129S1/SvImJ	ENSMUSG00200020492	lncRNA gene	Chr11:85936023-85960023 (+)
A/J	ENSMUSG00195009623	lncRNA gene	Chr11:85791043-85815053 (+)
AKR/J	ENSMUSG00220012256	lncRNA gene	Chr11:85990757-86014762 (+)
BALB/cJ	ENSMUSG00180011556	lncRNA gene	Chr11:85997322-86021155 (+)
C3H/HeJ	ENSMUSG00175032829	lncRNA gene	Chr11:85937485-85961485 (+)
C57BL/6NJ	ENSMUSG00215033214	lncRNA gene	Chr11:85574037-85604174 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002679	antisense lncRNA gene	Chr11:84154342-84177620 (+)
CAST/EiJ	ENSTCUG00005017296	lncRNA gene	Chr11:85494830-85524993 (+)
CBA/J	ENSMUSG00210041370	lncRNA gene	Chr11:85755045-85779048 (+)
DBA/2J	ENSMUSG00185020158	lncRNA gene	Chr11:86071201-86095201 (+)
FVB/NJ	ENSMUSG00205021723	lncRNA gene	Chr11:85950802-85974807 (+)
JF1/MsJ	ENSUMUG00000026674	lncRNA gene	Chr11:86399916-86429447 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190020981	lncRNA gene	Chr11:86103036-86127045 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010034153	lncRNA gene	Chr11:85938376-85968627 (+)
SPRET/EiJ	ENSMSPG00010028203	lncRNA gene	Chr11:86353064-86375572 (+)
WSB/EiJ	ENSIUOG00005008226	lncRNA gene	Chr11:85916860-85940678 (+)

Homology

• Gene Tree
  Scpep1os
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  13 phenotype references
  

• All Mutations and Alleles
  35
• Chemically induced (other)
  1
• Endonuclease-mediated
  1
• Gene trapped
  30
• Targeted
  3
• Genomic Mutations
  4 involving Scpep1os
• Find Mice (IMSR)
  6 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000087338 (Evidence)
• NCBI Gene
  73921

Representative Sequences			Length	Strain/Species
genomic	73921	NCBI Gene Model | MGI Sequence Detail	30134	C57BL/6J
transcript	NR_045955	RefSeq | MGI Sequence Detail	811	C57BL/6

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 22

  Diseases 1

  Phenotypes 13
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52

TSS for Scpep1os:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr104055	Chr11:88796751-88796764 (+)	4 bp