4833417C18Rik Gene Detail

Summary

• Symbol
  4833417C18Rik
• Name
  RIKEN cDNA 4833417C18 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1921156
  NCBI Gene: 73906
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr11:95749643-95751872 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 59.01 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  189 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1921156	lncRNA gene	Chr11:95749580-95759869 (+)
129S1/SvImJ	ENSMUSG00200053682	lncRNA gene	Chr11:92994016-92996222 (+)
A/J	ENSMUSG00195052929	lncRNA gene	Chr11:92713733-92715932 (+)
AKR/J	ENSMUSG00220051609	lncRNA gene	Chr11:92972762-92974960 (+)
BALB/cJ	ENSMUSG00180052976	lncRNA gene	Chr11:92969899-92972099 (+)
C3H/HeJ	ENSMUSG00175052606	lncRNA gene	Chr11:92973082-92975280 (+)
C57BL/6NJ	ENSMUSG00215054412	lncRNA gene	Chr11:92567005-92569210 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013332	unclassified non-coding RNA gene	Chr11:91603774-91605957 (+)
CAST/EiJ	ENSTCUG00005017568	lncRNA gene	Chr11:92421729-92423930 (+)
CBA/J	ENSMUSG00210053554	lncRNA gene	Chr11:92676367-92678565 (+)
DBA/2J	ENSMUSG00185051975	lncRNA gene	Chr11:93024911-93027116 (+)
FVB/NJ	ENSMUSG00205050990	lncRNA gene	Chr11:92881040-92883246 (+)
JF1/MsJ	ENSUMUG00000055315	lncRNA gene	Chr11:93328727-93330925 (+)
LP/J	ENSMUSG00230051351	lncRNA gene	Chr11:94077181-94079387 (+)
NOD/ShiLtJ	ENSMUSG00190051927	lncRNA gene	Chr11:93063629-93065829 (+)
NZO/HlLtJ	ENSMUSG00225053150	lncRNA gene	Chr11:96133177-96135382 (+)
PWK/PhJ	ENSLUMG00010051279	lncRNA gene	Chr11:92877094-92879292 (+)
SPRET/EiJ	ENSMSPG00010050428	lncRNA gene	Chr11:93366397-93368629 (+)
WSB/EiJ	ENSIUOG00005051962	lncRNA gene	Chr11:92825216-92827417 (+)

Homology

• Gene Tree
  4833417C18Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  10 phenotype references
  

• All Mutations and Alleles
  9
• Gene trapped
  7
• Targeted
  2
• Genomic Mutations
  2 involving 4833417C18Rik
• Find Mice (IMSR)
  2 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  36
• RefSeq
  1

• Ensembl
  ENSMUSG00000086015 (Evidence)
• NCBI Gene
  73906

Representative Sequences			Length	Strain/Species
genomic	73906	NCBI Gene Model | MGI Sequence Detail	2230	C57BL/6J
transcript	NR_045187	RefSeq | MGI Sequence Detail	1319	C57BL/6

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 21

  Phenotypes 10
• Earliest
  J:56548 Zheng B, et al., Engineering a mouse balancer chromosome. Nat Genet. 1999 Aug;22(4):375-8
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52

TSS for 4833417C18Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr104415	Chr11:95749680-95749706 (+)	50 bp
Tssr104416	Chr11:95749707-95749727 (+)	74 bp
Tssr104417	Chr11:95749731-95749758 (+)	102 bp