1700029K24Rik Gene Detail

Summary

• Symbol
  1700029K24Rik
• Name
  RIKEN cDNA 1700029K24 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1920521
  NCBI Gene: 73271
• Alliance
  genome feature page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr11:70544933-70546525 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  25 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1920521	lncRNA gene	Chr11:70544933-70546525 (+)
129S1/SvImJ	ENSMUSG00200050444	lncRNA gene	Chr11:67494039-67494617 (+)
A/J	ENSMUSG00195052771	lncRNA gene	Chr11:67519643-67520221 (+)
AKR/J	ENSMUSG00220054170	lncRNA gene	Chr11:67629067-67629645 (+)
BALB/cJ	ENSMUSG00180054075	lncRNA gene	Chr11:67588907-67589485 (+)
C3H/HeJ	ENSMUSG00175054444	lncRNA gene	Chr11:67539291-67539869 (+)
C57BL/6NJ	ENSMUSG00215055168	lncRNA gene	Chr11:67315444-67316022 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005053780	lncRNA gene	Chr11:67081800-67082376 (+)
CBA/J	ENSMUSG00210054345	lncRNA gene	Chr11:67393370-67393948 (+)
DBA/2J	ENSMUSG00185056924	lncRNA gene	Chr11:67630146-67630724 (+)
FVB/NJ	ENSMUSG00205053980	lncRNA gene	Chr11:67485934-67486512 (+)
JF1/MsJ	ENSUMUG00000057185	lncRNA gene	Chr11:68028701-68029279 (+)
LP/J	ENSMUSG00230053867	lncRNA gene	Chr11:68704573-68705151 (+)
NOD/ShiLtJ	ENSMUSG00190054213	lncRNA gene	Chr11:67623221-67623799 (+)
NZO/HlLtJ	ENSMUSG00225048277	lncRNA gene	Chr11:70885780-70886358 (+)
PWK/PhJ	ENSLUMG00010053661	lncRNA gene	Chr11:67497515-67498093 (+)
SPRET/EiJ	ENSMSPG00010049699	lncRNA gene	Chr11:68229105-68229683 (+)
WSB/EiJ	ENSIUOG00005052981	lncRNA gene	Chr11:67518215-67518793 (+)

Homology

• Gene Tree
  1700029K24Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  3
• Gene trapped
  2
• Targeted
  1
• Genomic Mutations
  1 involving 1700029K24Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• cDNA Data
  1

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000120880 (Evidence)
• NCBI Gene
  73271

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120880	Ensembl Gene Model | MGI Sequence Detail	1593	C57BL/6J
transcript	ENSMUST00000376273	Ensembl | MGI Sequence Detail	852	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 11

  Phenotypes 6
• Earliest
  J:56548 Zheng B, et al., Engineering a mouse balancer chromosome. Nat Genet. 1999 Aug;22(4):375-8
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52

TSS for 1700029K24Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr102769	Chr11:70542957-70542975 (+)	-1,967 bp
Tssr102770	Chr11:70543633-70543664 (+)	-1,284 bp
Tssr102771	Chr11:70543751-70543772 (+)	-1,171 bp
Tssr102772	Chr11:70544920-70544957 (+)	6 bp
Tssr102773	Chr11:70545914-70545931 (+)	990 bp
Tssr102774	Chr11:70545982-70545998 (+)	1,057 bp