Tnfsf13os Gene Detail

Summary

• Symbol
  Tnfsf13os
• Name
  tumor necrosis factor (ligand) superfamily, member 13, opposite strand
• Synonyms
  2010012P19Rik

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:1919587
  NCBI Gene: 100503827
• Alliance
  genome feature page
• Transcription Start Sites
  7 TSS

Location &
Maps

• Sequence Map
  Chr11:69572858-69581967 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 42.86 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  214 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1919587	antisense lncRNA gene	Chr11:69572842-69590215 (+)
129S1/SvImJ	ENSMUSG00200050605	lncRNA gene	Chr11:66519015-66536278 (+)
A/J	ENSMUSG00195052708	lncRNA gene	Chr11:66545979-66563218 (+)
AKR/J	ENSMUSG00220054158	lncRNA gene	Chr11:66654202-66671463 (+)
BALB/cJ	ENSMUSG00180054183	lncRNA gene	Chr11:66615672-66632924 (+)
C3H/HeJ	ENSMUSG00175054419	lncRNA gene	Chr11:66565901-66583149 (+)
C57BL/6NJ	ENSMUSG00215055156	lncRNA gene	Chr11:66342299-66359554 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002650	antisense lncRNA gene	Chr11:64418078-64426879 (+)
CAST/EiJ	ENSTCUG00005053789	lncRNA gene	Chr11:66106052-66123363 (+)
CBA/J	ENSMUSG00210054396	lncRNA gene	Chr11:66419988-66437238 (+)
DBA/2J	ENSMUSG00185056813	lncRNA gene	Chr11:66619025-66636329 (+)
FVB/NJ	ENSMUSG00205053958	lncRNA gene	Chr11:66511292-66528548 (+)
JF1/MsJ	ENSUMUG00000057237	lncRNA gene	Chr11:67017378-67034685 (+)
LP/J	ENSMUSG00230053763	lncRNA gene	Chr11:67729373-67746631 (+)
NOD/ShiLtJ	ENSMUSG00190054191	lncRNA gene	Chr11:66648891-66666150 (+)
NZO/HlLtJ	ENSMUSG00225048608	lncRNA gene	Chr11:69911437-69928676 (+)
PWK/PhJ	ENSLUMG00010053560	lncRNA gene	Chr11:66535429-66552695 (+)
SPRET/EiJ	ENSMSPG00010049337	lncRNA gene	Chr11:67262962-67280115 (+)
WSB/EiJ	ENSIUOG00005052601	lncRNA gene	Chr11:66548587-66565765 (+)

Homology

• Gene Tree
  Tnfsf13os
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  12 phenotype references
  

• All Mutations and Alleles
  50
• Chemically induced (other)
  1
• Gene trapped
  48
• Targeted
  1
• Genomic Mutations
  2 involving Tnfsf13os
• Find Mice (IMSR)
  77 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  5

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  35
• RefSeq
  2

• Ensembl
  ENSMUSG00000085890 (Evidence)
• NCBI Gene
  100503827

Representative Sequences			Length	Strain/Species
genomic	100503827	NCBI Gene Model | MGI Sequence Detail	9110	C57BL/6J
transcript	NR_166808	RefSeq | MGI Sequence Detail	878	C57BL/6

Molecular
Reagents

• All nucleic 5

  cDNA 5

  
  

  Microarray probesets 1

References

• Summaries
  All 23

  Phenotypes 12
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52

TSS for Tnfsf13os:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr102519	Chr11:69575149-69575161 (+)	2,297 bp
Tssr102520	Chr11:69575181-69575210 (+)	2,338 bp
Tssr102521	Chr11:69575222-69575237 (+)	2,372 bp
Tssr102522	Chr11:69575315-69575333 (+)	2,466 bp
Tssr102523	Chr11:69575377-69575388 (+)	2,525 bp
Tssr102524	Chr11:69576763-69576776 (+)	3,912 bp
Tssr102525	Chr11:69577533-69577568 (+)	4,693 bp