Bcas3os1 Gene Detail

Summary

• Symbol
  Bcas3os1
• Name
  BCAS3 microtubule associated cell migration factor, opposite strand 1
• Synonyms
  8430403D17Rik

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:1918739
  NCBI Gene: 71489
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:85593026-85610570 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 51.34 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  383 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1918739	antisense lncRNA gene	Chr11:85588143-85610869 (-)
129S1/SvImJ	ENSMUSG00200020540	lncRNA gene	Chr11:82748197-82765764 (-)
A/J	ENSMUSG00195009780	lncRNA gene	Chr11:82602817-82620394 (-)
AKR/J	ENSMUSG00220012425	lncRNA gene	Chr11:82795116-82812201 (-)
BALB/cJ	ENSMUSG00180011873	lncRNA gene	Chr11:82784444-82801994 (-)
C3H/HeJ	ENSMUSG00175032675	lncRNA gene	Chr11:82749600-82767166 (-)
C57BL/6NJ	ENSMUSG00215029607	lncRNA gene	Chr11:82368313-82385860 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002671	antisense lncRNA gene	Chr11:80913571-80930805 (-)
CAST/EiJ	ENSTCUG00005046521	lncRNA gene	Chr11:82293907-82311407 (-)
CBA/J	ENSMUSG00210041409	lncRNA gene	Chr11:82567195-82584746 (-)
DBA/2J	ENSMUSG00185020187	lncRNA gene	Chr11:82876592-82893679 (-)
FVB/NJ	ENSMUSG00205023516	lncRNA gene	Chr11:82672370-82689918 (-)
JF1/MsJ	ENSUMUG00000028637	lncRNA gene	Chr11:83198232-83215318 (-)
LP/J	ENSMUSG00230030156	lncRNA gene	Chr11:83917229-83934797 (-)
NOD/ShiLtJ	ENSMUSG00190020614	lncRNA gene	Chr11:82884383-82901928 (-)
NZO/HlLtJ	ENSMUSG00225040165	lncRNA gene	Chr11:86020293-86037834 (-)
PWK/PhJ	ENSLUMG00010034523	lncRNA gene	Chr11:82697420-82714473 (-)
SPRET/EiJ	ENSMSPG00010028444	lncRNA gene	Chr11:83161177-83178106 (-)
WSB/EiJ	ENSIUOG00005008569	lncRNA gene	Chr11:82704195-82721726 (-)

Homology

• Gene Tree
  Bcas3os1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  9 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Gene trapped
  2
• Targeted
  1
• Genomic Mutations
  2 involving Bcas3os1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  31
• RefSeq
  1

• Ensembl
  ENSMUSG00000086199 (Evidence)
• NCBI Gene
  71489

Representative Sequences			Length	Strain/Species
genomic	71489	NCBI Gene Model | MGI Sequence Detail	17545	C57BL/6J
transcript	NR_045875	RefSeq | MGI Sequence Detail	3138	C57BL/6

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 17

  Phenotypes 9
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52

TSS for Bcas3os1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr109813	Chr11:85610563-85610576 (-)	0 bp