5530401A14Rik Gene Detail

Summary

• Symbol
  5530401A14Rik
• Name
  RIKEN cDNA 5530401A14 gene

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:1918638
  NCBI Gene: 71388
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr11:81751503-81785408 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 49.61 cM, cytoband B5
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  967 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1918638	protein coding gene	Chr11:81751499-81785408 (+)
129S1/SvImJ	ENSMUSG00200051004	protein coding gene	Chr11:78873937-78907847 (+)
A/J	ENSMUSG00195044006	protein coding gene	Chr11:78739908-78773816 (+)
AKR/J	ENSMUSG00220046888	protein coding gene	Chr11:78974944-79008810 (+)
BALB/cJ	ENSMUSG00180037913	protein coding gene	Chr11:78939666-78973580 (+)
C3H/HeJ	ENSMUSG00175031585	protein coding gene	Chr11:78910347-78944254 (+)
C57BL/6NJ	ENSMUSG00215040762	protein coding gene	Chr11:78534956-78568863 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0016845	protein coding gene	Chr11:76811420-76845383 (+)
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210046268	protein coding gene	Chr11:78728080-78761986 (+)
DBA/2J	ENSMUSG00185031227	protein coding gene	Chr11:78999315-79033223 (+)
FVB/NJ	ENSMUSG00205043605	protein coding gene	Chr11:78815757-78849664 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230041228	protein coding gene	Chr11:80029458-80063367 (+)
NOD/ShiLtJ	ENSMUSG00190035225	protein coding gene	Chr11:79051405-79085315 (+)
NZO/HlLtJ	ENSMUSG00225038719	protein coding gene	Chr11:82204091-82237926 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  5530401A14Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  10 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Targeted
  3
• Genomic Mutations
  2 involving 5530401A14Rik
• Incidental Mutations
  APF
• Find Mice (IMSR)
  4 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000020703 (Evidence)
• NCBI Gene
  71388

Representative Sequences			Length	Strain/Species
genomic	71388	NCBI Gene Model | MGI Sequence Detail	33906	C57BL/6J
transcript	NR_038010	RefSeq | MGI Sequence Detail	1838	C57BL/6
polypeptide	Q9D3H9	UniProt | EBI | MGI Sequence Detail	131	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 4

  Genomic 1

  cDNA 3

  
  

  Microarray probesets 3

References

• Summaries
  All 25

  Phenotypes 10
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52