4931413K12Rik Gene Detail

Summary

• Symbol
  4931413K12Rik
• Name
  RIKEN cDNA 4931413K12 gene
• Synonyms
  1700067H02Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:1918237
  NCBI Gene: 70987
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr11:75480850-75485626 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 45.92 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  26 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1918237	lncRNA gene	Chr11:75480491-75485626 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015186	unclassified non-coding RNA gene	Chr11:76351010-76356112 (-)
A/J	MGP_AJ_G0015160	unclassified non-coding RNA gene	Chr11:73507528-73512632 (-)
AKR/J	MGP_AKRJ_G0015123	unclassified non-coding RNA gene	Chr11:75731378-75736656 (-)
BALB/cJ	MGP_BALBcJ_G0015122	unclassified non-coding RNA gene	Chr11:73879103-73884209 (-)
C3H/HeJ	MGP_C3HHeJ_G0014946	unclassified non-coding RNA gene	Chr11:75749243-75754659 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015579	unclassified non-coding RNA gene	Chr11:78762222-78767328 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013322	unclassified non-coding RNA gene	Chr11:70522231-70527429 (-)
CAST/EiJ	MGP_CASTEiJ_G0014499	unclassified non-coding RNA gene	Chr11:76147281-76153491 (-)
CBA/J	MGP_CBAJ_G0014925	unclassified non-coding RNA gene	Chr11:82207375-82212518 (-)
DBA/2J	MGP_DBA2J_G0015018	unclassified non-coding RNA gene	Chr11:73110936-73116037 (-)
FVB/NJ	MGP_FVBNJ_G0015030	unclassified non-coding RNA gene	Chr11:72673443-72678549 (-)
LP/J	MGP_LPJ_G0015099	unclassified non-coding RNA gene	Chr11:76932571-76939625 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015056	unclassified non-coding RNA gene	Chr11:82752109-82757211 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015618	unclassified non-coding RNA gene	Chr11:75943903-75949008 (-)
PWK/PhJ	MGP_PWKPhJ_G0014291	unclassified non-coding RNA gene	Chr11:73811024-73816119 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014078	unclassified non-coding RNA gene	Chr11:75500282-75505377 (-)
WSB/EiJ	MGP_WSBEiJ_G0014602	unclassified non-coding RNA gene	Chr11:75754637-75759742 (-)

Homology

• Gene Tree
  4931413K12Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  10 phenotype references
  

• All Mutations and Alleles
  12
• Chemically induced (other)
  1
• Gene trapped
  10
• Targeted
  1
• Genomic Mutations
  2 involving 4931413K12Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000085088 (Evidence)
• NCBI Gene
  70987

Representative Sequences			Length	Strain/Species
genomic	70987	NCBI Gene Model | MGI Sequence Detail	4777	C57BL/6J
transcript	NR_166698	RefSeq | MGI Sequence Detail	952	C57BL/6

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:1920718

References

• Summaries
  All 20

  Phenotypes 10
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52

TSS for 4931413K12Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr109218	Chr11:75485619-75485630 (-)	1 bp
Tssr109217	Chr11:75485591-75485609 (-)	26 bp
Tssr109216	Chr11:75485589-75485590 (-)	36 bp
Tssr109215	Chr11:75485569-75485586 (-)	48 bp
Tssr109214	Chr11:75485562-75485567 (-)	61 bp