4931413K12Rik Gene Detail

Summary

• Symbol
  4931413K12Rik
• Name
  RIKEN cDNA 4931413K12 gene
• Synonyms
  1700067H02Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:1918237
  NCBI Gene: 70987
• Alliance
  genome feature page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr11:75480850-75485626 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 45.92 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  176 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1918237	lncRNA gene	Chr11:75480491-75485662 (-)
129S1/SvImJ	ENSMUSG00200051334	lncRNA gene	Chr11:72597322-72602425 (-)
A/J	ENSMUSG00195045157	lncRNA gene	Chr11:72475711-72480816 (-)
AKR/J	ENSMUSG00220048539	lncRNA gene	Chr11:72690928-72696030 (-)
BALB/cJ	ENSMUSG00180043285	lncRNA gene	Chr11:72664161-72669265 (-)
C3H/HeJ	ENSMUSG00175041273	lncRNA gene	Chr11:72634073-72639175 (-)
C57BL/6NJ	ENSMUSG00215043170	lncRNA gene	Chr11:72256876-72261982 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013322	unclassified non-coding RNA gene	Chr11:70522231-70527429 (-)
CAST/EiJ	ENSTCUG00005045890	lncRNA gene	Chr11:72159023-72164069 (-)
CBA/J	ENSMUSG00210047982	lncRNA gene	Chr11:72452549-72457652 (-)
DBA/2J	ENSMUSG00185039818	lncRNA gene	Chr11:72722534-72727637 (-)
FVB/NJ	ENSMUSG00205047335	lncRNA gene	Chr11:72560076-72565182 (-)
JF1/MsJ	ENSUMUG00000053894	lncRNA gene	Chr11:73106722-73111319 (-)
LP/J	ENSMUSG00230049649	lncRNA gene	Chr11:73753164-73758267 (-)
NOD/ShiLtJ	ENSMUSG00190048242	lncRNA gene	Chr11:72768963-72774065 (-)
NZO/HlLtJ	ENSMUSG00225040027	lncRNA gene	Chr11:75926608-75931710 (-)
PWK/PhJ	ENSLUMG00010025201	lncRNA gene	Chr11:72624196-72629335 (-)
SPRET/EiJ	ENSMSPG00010045006	lncRNA gene	Chr11:73024064-73029195 (-)
WSB/EiJ	ENSIUOG00005035732	lncRNA gene	Chr11:72622740-72627845 (-)

Homology

• Gene Tree
  4931413K12Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  10 phenotype references
  

• All Mutations and Alleles
  12
• Chemically induced (other)
  1
• Gene trapped
  10
• Targeted
  1
• Genomic Mutations
  2 involving 4931413K12Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1

• Ensembl
  ENSMUSG00000085088 (Evidence)
• NCBI Gene
  70987

Representative Sequences			Length	Strain/Species
genomic	70987	NCBI Gene Model | MGI Sequence Detail	4777	C57BL/6J
transcript	NR_166698	RefSeq | MGI Sequence Detail	952	C57BL/6

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:1920718

References

• Summaries
  All 20

  Phenotypes 10
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52

TSS for 4931413K12Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr109218	Chr11:75485619-75485630 (-)	1 bp
Tssr109217	Chr11:75485591-75485609 (-)	26 bp
Tssr109216	Chr11:75485589-75485590 (-)	36 bp
Tssr109215	Chr11:75485569-75485586 (-)	48 bp
Tssr109214	Chr11:75485562-75485567 (-)	61 bp