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1700003D09Rik Gene Detail
Summary
  • Symbol
    1700003D09Rik
  • Name
    RIKEN cDNA 1700003D09 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1916588
    NCBI Gene: 69338
  • Alliance
    genome feature page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:98241544-98249109 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 11, 61.75 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    228 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1916588
 lncRNA gene Chr11:98241544-98249109 (-)
129S1/SvImJ ENSMUSG00200053179
 lncRNA gene Chr11:95496550-95504127 (-)
A/J ENSMUSG00195052701
 lncRNA gene Chr11:95211628-95219196 (-)
AKR/J ENSMUSG00220051709
 lncRNA gene Chr11:95470726-95478292 (-)
BALB/cJ ENSMUSG00180052324
 lncRNA gene Chr11:95483412-95490979 (-)
C3H/HeJ ENSMUSG00175052885
 lncRNA gene Chr11:95470153-95477730 (-)
C57BL/6NJ ENSMUSG00215054367
 lncRNA gene Chr11:95059690-95067257 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0013342
 unclassified non-coding RNA gene Chr11:94136784-94144392 (-)
CAST/EiJ ENSTCUG00005050689
 lncRNA gene Chr11:94923087-94930680 (-)
CBA/J ENSMUSG00210053482
 lncRNA gene Chr11:95173666-95181232 (-)
DBA/2J ENSMUSG00185052739
 lncRNA gene Chr11:95520064-95527639 (-)
FVB/NJ ENSMUSG00205049882
 lncRNA gene Chr11:95386970-95394547 (-)
JF1/MsJ ENSUMUG00000055811
 lncRNA gene Chr11:95825878-95833455 (-)
LP/J ENSMUSG00230051213
 lncRNA gene Chr11:96572970-96580547 (-)
NOD/ShiLtJ ENSMUSG00190053169
 lncRNA gene Chr11:95561377-95568942 (-)
NZO/HlLtJ ENSMUSG00225052955
 lncRNA gene Chr11:98625001-98632587 (-)
PWK/PhJ ENSLUMG00010052345
 lncRNA gene Chr11:95377943-95385516 (-)
SPRET/EiJ ENSMSPG00010051374
 lncRNA gene Chr11:95870354-95877876 (-)
WSB/EiJ ENSIUOG00005051044
 lncRNA gene Chr11:95326482-95334058 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • cDNA Data
    1
Sequences &
Gene Models
less
  • All Sequences
    26
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 69338 NCBI Gene Model | MGI Sequence Detail 7566 C57BL/6J ±  kb
transcript NR_045477 RefSeq | MGI Sequence Detail 1389 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1

    Microarray probesets 2
References
more
  • Summaries
    All 16
    Phenotypes 5
  • Earliest
    J:56548 Zheng B, et al., Engineering a mouse balancer chromosome. Nat Genet. 1999 Aug;22(4):375-8
  • Latest
    J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory