2410006H16Rik Gene Detail

Summary

• Symbol
  2410006H16Rik
• Name
  RIKEN cDNA 2410006H16 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1916471
  NCBI Gene: 69221
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr11:62493703-62495632 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 38.51 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  126 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1916471	lncRNA gene	Chr11:62493536-62495725 (+)
129S1/SvImJ	ENSMUSG00200037248	lncRNA gene	Chr11:59416390-59418464 (+)
A/J	ENSMUSG00195041981	lncRNA gene	Chr11:59454685-59456760 (+)
AKR/J	ENSMUSG00220051039	lncRNA gene	Chr11:59557887-59559961 (+)
BALB/cJ	ENSMUSG00180051237	lncRNA gene	Chr11:59507474-59509549 (+)
C3H/HeJ	ENSMUSG00175048739	lncRNA gene	Chr11:59471505-59473580 (+)
C57BL/6NJ	ENSMUSG00215040514	lncRNA gene	Chr11:59214587-59216662 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013314	unclassified non-coding RNA gene	Chr11:57427413-57429725 (+)
CAST/EiJ	ENSTCUG00005047302	lncRNA gene	Chr11:59027941-59030015 (+)
CBA/J	ENSMUSG00210041729	lncRNA gene	Chr11:59304882-59306957 (+)
DBA/2J	ENSMUSG00185046281	lncRNA gene	Chr11:59497198-59499272 (+)
FVB/NJ	ENSMUSG00205051218	lncRNA gene	Chr11:59373829-59375903 (+)
JF1/MsJ	ENSUMUG00000049639	lncRNA gene	Chr11:59927274-59929348 (+)
LP/J	ENSMUSG00230054040	lncRNA gene	Chr11:60637582-60639656 (+)
NOD/ShiLtJ	ENSMUSG00190052046	lncRNA gene	Chr11:59483776-59485850 (+)
NZO/HlLtJ	ENSMUSG00225047998	lncRNA gene	Chr11:62783428-62785502 (+)
PWK/PhJ	ENSLUMG00010036411	lncRNA gene	Chr11:59442662-59444734 (+)
SPRET/EiJ	ENSMSPG00010042317	lncRNA gene	Chr11:60110024-60112092 (+)
WSB/EiJ	ENSIUOG00005038864	lncRNA gene	Chr11:59408677-59410751 (+)

Homology

• Gene Tree
  2410006H16Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  12 phenotype references
  

• All Mutations and Alleles
  60
• Chemically induced (other)
  1
• Gene trapped
  59
• Genomic Mutations
  1 involving 2410006H16Rik
• Find Mice (IMSR)
  25 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  27

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  53
• RefSeq
  1

• Ensembl
  ENSMUSG00000086841 (Evidence)
• NCBI Gene
  69221

Representative Sequences			Length	Strain/Species
genomic	69221	NCBI Gene Model | MGI Sequence Detail	1930	C57BL/6J
transcript	NR_030738	RefSeq | MGI Sequence Detail	461	C57BL/6

Molecular
Reagents

• All nucleic 27

  cDNA 27

  
  

  Microarray probesets 2

References

• Summaries
  All 27

  Phenotypes 12
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:198500 Nakahara M, et al., Gene-trap mutagenesis using Mol/MSM-1 embryonic stem cells from MSM/Ms mice. Mamm Genome. 2013 Jun;24(5-6):228-39

TSS for 2410006H16Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr102048	Chr11:62493693-62493712 (+)	0 bp
Tssr102049	Chr11:62493783-62493817 (+)	97 bp