1110028F11Rik Gene Detail

Summary

• Symbol
  1110028F11Rik
• Name
  RIKEN cDNA 1110028F11 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1915940
  NCBI Gene: 68690
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:87592222-87596221 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 52.19 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  31 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1915940	lncRNA gene	Chr11:87590350-87596221 (+)
129S1/SvImJ	ENSMUSG00200020565	lncRNA gene	Chr11:84721683-84725618 (+)
A/J	ENSMUSG00195009671	lncRNA gene	Chr11:84576543-84580478 (+)
AKR/J	ENSMUSG00220012332	lncRNA gene	Chr11:84776083-84780020 (+)
BALB/cJ	ENSMUSG00180012028	lncRNA gene	Chr11:84783326-84787259 (+)
C3H/HeJ	ENSMUSG00175032957	lncRNA gene	Chr11:84723121-84727052 (+)
C57BL/6NJ	ENSMUSG00215033482	lncRNA gene	Chr11:84367858-84371793 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034448	sense intronic lncRNA gene	Chr11:82915199-82919149 (+)
CAST/EiJ	ENSTCUG00005017601	lncRNA gene	Chr11:84277801-84281687 (+)
CBA/J	ENSMUSG00210040623	lncRNA gene	Chr11:84540670-84544603 (+)
DBA/2J	ENSMUSG00185020317	lncRNA gene	Chr11:84857392-84861324 (+)
FVB/NJ	ENSMUSG00205022140	lncRNA gene	Chr11:84736313-84740240 (+)
JF1/MsJ	ENSUMUG00000031240	lncRNA gene	Chr11:85181553-85185501 (+)
LP/J	ENSMUSG00230030444	lncRNA gene	Chr11:85890642-85894577 (+)
NOD/ShiLtJ	ENSMUSG00190019892	lncRNA gene	Chr11:84888663-84892596 (+)
NZO/HlLtJ	ENSMUSG00225039743	lncRNA gene	Chr11:88006584-88010509 (+)
PWK/PhJ	ENSLUMG00010033113	lncRNA gene	Chr11:84740392-84744310 (+)
SPRET/EiJ	ENSMSPG00010028822	lncRNA gene	Chr11:85140388-85144233 (+)
WSB/EiJ	ENSIUOG00005008146	lncRNA gene	Chr11:84695193-84699084 (+)

Homology

• Gene Tree
  1110028F11Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Targeted
  1
• Genomic Mutations
  2 involving 1110028F11Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  31
• RefSeq
  1

• Ensembl
  ENSMUSG00000085972 (Evidence)
• NCBI Gene
  68690

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085972	Ensembl Gene Model | MGI Sequence Detail	4000	C57BL/6J
transcript	ENSMUST00000294637	Ensembl | MGI Sequence Detail	1327	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 16

  Phenotypes 8
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52

TSS for 1110028F11Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr103955	Chr11:87590721-87590740 (+)	-1,491 bp