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Sclt1 Gene Detail
Summary
  • Symbol
    Sclt1
  • Name
    sodium channel and clathrin linker 1
  • Synonyms
    2610207F23Rik, 4931421F20Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1914411
    NCBI Gene: 67161
  • Alliance
    genome feature page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:41581155-41696949 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 3, 19.91 cM, cytoband C
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    3081 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914411
 protein coding gene Chr3:41581140-41696968 (-)
129S1/SvImJ ENSMUSG00200006046
 protein coding gene Chr3:38325632-38447728 (-)
A/J ENSMUSG00195001412
 protein coding gene Chr3:38302375-38418110 (-)
AKR/J ENSMUSG00220000561
 protein coding gene Chr3:38391453-38507266 (-)
BALB/cJ ENSMUSG00180002315
 protein coding gene Chr3:38437141-38559657 (-)
C3H/HeJ ENSMUSG00175003342
 protein coding gene Chr3:38300234-38415980 (-)
C57BL/6NJ ENSMUSG00215001500
 protein coding gene Chr3:38719154-38834962 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0024965
 protein coding gene Chr3:36172555-36282823 (-)
CAST/EiJ ENSTCUG00005000998
 protein coding gene Chr3:38177061-38292442 (-)
CBA/J ENSMUSG00210001268
 protein coding gene Chr3:38395663-38511410 (-)
DBA/2J ENSMUSG00185000886
 protein coding gene Chr3:38599891-38722410 (-)
FVB/NJ ENSMUSG00205000659
 protein coding gene Chr3:37718337-37834142 (-)
JF1/MsJ ENSUMUG00000000541
 protein coding gene Chr3:38106412-38223379 (-)
LP/J ENSMUSG00230022497
 protein coding gene Chr3:40566587-40689103 (-)
NOD/ShiLtJ ENSMUSG00190001011
 protein coding gene Chr3:38655360-38771161 (-)
NZO/HlLtJ ENSMUSG00225000483
 protein coding gene Chr3:43187564-43310080 (-)
PWK/PhJ ENSLUMG00010000480
 protein coding gene Chr3:38146822-38263750 (-)
SPRET/EiJ ENSMSPG00010000590
 protein coding gene Chr3:38582572-38710057 (-)
WSB/EiJ ENSIUOG00005012614
 protein coding gene Chr3:38585367-38700978 (-)



Homology
more
  • Human Ortholog
    SCLT1, sodium channel and clathrin linker 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SCLT1, sodium channel and clathrin linker 1
  • Synonyms
    CAP-1A, CAP1A
  • Links
    NCBI Gene ID: 132320
    UniProt: Q96NL6

  • Chr Location
    4q28.2; chr4:128864921-129093600 (-)  GRCh38
Human Diseases
more
  • Diseases
    2 with Sclt1 mouse models

Human Disease Mouse Models
      
IDs
 View 1 model
IDs
 View 1 model
Click on a disease name to see all genes associated with that disease.

  • Mutations/Alleles
    1 with disease annotations
  • References
    2 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    17 phenotypes from 2 alleles in 2 genetic backgrounds
    8 phenotypes from multigenic genotypes
    28 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Homozygous knockout causes polycystic kidney disease, impaired postnatal weight gain and premature death (before 1 month of age).
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    27
  • GO References
    9
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    613
  • Tissues
    5
  • cDNA Data
    29
  • Literature Summary
    2
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000059834 Ensembl Gene Model | MGI Sequence Detail 115795 C57BL/6J ±  kb
    transcript ENSMUST00000026866 Ensembl | MGI Sequence Detail 3005 Not Applicable  
    polypeptide ENSMUSP00000026866 Ensembl | MGI Sequence Detail 688 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 34
      cDNA 32
      Primer pair 2
      Antibodies 1

      Microarray probesets 3
    Other
    Accession IDs
    less
    MGI:1918225, MGI:3612988
    References
    more
    • Summaries
      All 56
      Developmental Gene Expression 2
      Diseases 2
      Gene Ontology 9
      Phenotypes 28
    • Earliest
      J:64276 Lyon MF, et al., Dose-response curves for radiation-induced gene mutations in mouse oocytes and their interpretation. Mutat Res. 1979 Nov;63(1):161-73
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    09/01/2026
    MGI 6.24     		The Jackson Laboratory