About   Help   FAQ
Rogdi Gene Detail
Summary
  • Symbol
    Rogdi
  • Name
    rogdi homolog
  • Synonyms
    0610011C19Rik, Lzf
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913299
    NCBI Gene: 66049
  • Alliance
    gene page
  • Transcription Start Sites
    9 TSS
Location &
Maps
more
  • Sequence Map
    Chr16:4826594-4831417 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 16, 2.49 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    28 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913299
 protein coding gene Chr16:4826593-4831438 (-)
129S1/SvImJ MGP_129S1SvImJ_G0022481
 protein coding gene Chr16:1534877-1539690 (-)
A/J MGP_AJ_G0022443
 protein coding gene Chr16:1343129-1347961 (-)
AKR/J MGP_AKRJ_G0022420
 protein coding gene Chr16:1540207-1545761 (-)
BALB/cJ MGP_BALBcJ_G0022448
 protein coding gene Chr16:1495908-1501298 (-)
C3H/HeJ MGP_C3HHeJ_G0022215
 protein coding gene Chr16:1560295-1565829 (-)
C57BL/6NJ MGP_C57BL6NJ_G0022897
 protein coding gene Chr16:1620966-1626798 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0020418
 protein coding gene Chr16:1275743-1281088 (-)
CAST/EiJ MGP_CASTEiJ_G0021741
 protein coding gene Chr16:1564965-1569809 (-)
CBA/J MGP_CBAJ_G0022184
 protein coding gene Chr16:1717720-1722758 (-)
DBA/2J MGP_DBA2J_G0022315
 protein coding gene Chr16:1444171-1449040 (-)
FVB/NJ MGP_FVBNJ_G0022290
 protein coding gene Chr16:1439124-1443936 (-)
LP/J MGP_LPJ_G0022383
 protein coding gene Chr16:1521175-1527266 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0022312
 protein coding gene Chr16:1553945-1558788 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0022909
 protein coding gene Chr16:1511027-1517141 (-)
PWK/PhJ MGP_PWKPhJ_G0021481
 protein coding gene Chr16:1521069-1525834 (-)
SPRET/EiJ MGP_SPRETEiJ_G0021312
 protein coding gene Chr16:1598721-1603523 (-)
WSB/EiJ MGP_WSBEiJ_G0021790
 protein coding gene Chr16:1528296-1533489 (-)



Homology
more
  • Human Ortholog
    ROGDI, rogdi atypical leucine zipper
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    ROGDI, rogdi atypical leucine zipper
  • Synonyms
    KTZS, RAV2, ROGD1
  • Links
    NCBI Gene ID: 79641
    neXtProt AC: NX_Q9GZN7
    UniProt: Q9GZN7

  • Chr Location
    16p13.3; chr16:4796968-4802880 (-)  GRCh38
Human Diseases
more
  • Diseases
    1 with human ROGDI associations

Human Disease Mouse Models
      
IDs
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype reference
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    13
  • GO References
    5
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    816
  • Tissues
    58
  • cDNA Data
    106
  • Literature Summary
    5
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000022540 Ensembl Gene Model | MGI Sequence Detail 4824 C57BL/6J ±  kb
transcript ENSMUST00000023191 Ensembl | MGI Sequence Detail 1431 Not Applicable  
polypeptide ENSMUSP00000023191 Ensembl | MGI Sequence Detail 309 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 108
    cDNA 106
    Primer pair 2

    Microarray probesets 3
Other
Accession IDs
less
MGI:2146556, MGI:2146693
References
more
  • Summaries
    All 32
    Developmental Gene Expression 5
    Gene Ontology 5
    Phenotypes 1
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
09/12/2023
MGI 6.22 		The Jackson Laboratory