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Mapping Data
Experiment
  • Experiment
    CROSS
  • Chromosome
    17
  • Reference
    J:31802 Gregorova S, et al., Sub-milliMorgan map of the proximal part of mouse Chromosome 17 including the hybrid sterility 1 gene. Mamm Genome. 1996 Feb;7(2):107-13
  • ID
    MGI:46295
Genes
GeneAlleleAssay TypeDescription
T visible phenotype
D17Leh119I Southern analysis p119A-R
D17Leh119II Southern analysis p119A-R
D17Mit18 PCR amplified length variant
D17Mit143 PCR amplified length variant
D17Mit164 PCR amplified length variant
Map3k4 Southern analysis pMK174
Sod2 Southern analysis pmMnSOD1
D17Mit57 PCR amplified length variant
D17Mit113 PCR amplified length variant
D17Zt6 PCR amplified length variant
D17Zt7 PCR amplified length variant
D17Ph2 restriction analysis pCO79R
D17Ph5e restriction analysis pc417
D17Mit78 PCR amplified length variant
Hst1 visible phenotype
Tbp PCR amplified length variant
D17Ph4e restriction analysis pc891
D17Ph1 restriction analysis pFFEH11R
D17Leh80 PCR amplified length variant
D17Mit165 PCR amplified length variant
D17Tu50 PCR amplified length variant
D17Mit59 PCR amplified length variant
D17Mit133 PCR amplified length variant
D17Ph3 restriction analysis pM10.1
D17Mit43 PCR amplified length variant
D17Mit46 PCR amplified length variant
D17Mit100 PCR amplified length variant
D17Mit173 PCR amplified length variant
Hba-ps4 Southern analysis [a] [g]4
D17Mit30 PCR amplified length variant
D17Mit29 PCR amplified length variant
D17Mit167 PCR amplified length variant
Pim1 Southern analysis pPim1
D17Mit23 PCR amplified length variant
D17Mit45 PCR amplified length variant
D17Mit101 PCR amplified length variant
D17Mit61 PCR amplified length variant
H2-K1 Southern analysis p1954
D17Mit62 PCR amplified length variant
Notes
  • Reference
    MGD accession numbers for the backcross data and for physical mapping data are MGD-CREX-385 and MGD-PMEX-8 respectively. Tbp and D17Ph4e were proposed by the authors to be prime candidates for Hst1 based on their expression in the testes and complete linkage with Hst1. Authors use D17Leh119, this locus symbol has been split into two symbols D17Leh119I and D17Leh119II.
  • Experiment
    Offspring types indicate alleles inherited from F1 parent.
CROSS
  • Type
    Backcross, sexes unspecified or combined
  • Female Parent
    <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b>/<c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c>
  • Strain
    (C57BL/10SnPh-T x C3H/DiPh)F1
  • Male Parent
    <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c>/<c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c>
  • Strain
    C3H/DiPh
  • Allele 1
    b from C57BL/10SnPh-T
  • Allele 2
    c from C3H/DiPh
CROSS Data
MC #mice T D17Leh119I D17Leh119II D17Mit18 D17Mit143 D17Mit164 Map3k4 Sod2 D17Mit57 D17Mit113 D17Zt6 D17Zt7 D17Ph2 D17Ph5e D17Mit78 Hst1 Tbp D17Ph4e D17Ph1 D17Leh80 D17Mit165 D17Tu50 D17Mit59 D17Mit133 D17Ph3 D17Mit43 D17Mit46 D17Mit100 D17Mit173 Hba-ps4 D17Mit30 D17Mit29 D17Mit167 Pim1 D17Mit23 D17Mit45 D17Mit101 D17Mit61 H2-K1 D17Mit62
521 b b b b b b b b b b b b b b b b b b b b b b b b b b b b b b b b b b b b b b b b
695 c c c c c c c c c c c c c c c c c c c c c c c c c c c c c c c c c c c c c c c c
16 b b b b b b c c c c c c c c c c c c c c c c c c c c c c c c c c c c c c c c c c
22 c c c c c c b b b b b b b b b b b b b b b b b b b b b b b b b b b b b b b b b b
1 b b b b b b b c c c c c c c c c c c c c c c c c c c c c c c c c c c c c c c c c
1 c c c c c c c b b b b b b b b b b b b b b b b b b b b b b b b b b b b b b b b b
2 b b b b b b b b b b c c c c c c c c c c c c c c c c c c c c c c c c c c c c c c
3 c c c c c c c c c c b b b b b b b b b b b b b b b b b b b b b b b b b b b b b b
3 c c c c c c c c c c c c c c c b b b b b b b b b b b b b b b b b b b b b b b b b
2 b b b b b b b b b b b b b b b b b b c c c c c c c c c c c c c c c c c c c c c c
8 b b b b b b b b b b b b b b b b b b b c c c c c c c c c c c c c c c c c c c c c
5 c c c c c c c c c c c c c c c c c c c b b b b b b b b b b b b b b b b b b b b b
2 b b b b b b b b b b b b b b b b b b b b b c c c c c c c c c c c c c c c c c c c
2 c c c c c c c c c c c c c c c c c c c c c b b b b b b b b b b b b b b b b b b b
12 b b b b b b b b b b b b b b b b b b b b b b b c c c c c c c c c c c c c c c c c
11 c c c c c c c c c c c c c c c c c c c c c c c b b b b b b b b b b b b b b b b b
2 b b b b b b b b b b b b b b b b b b b b b b b b b c c c c c c c c c c c c c c c
4 c c c c c c c c c c c c c c c c c c c c c c c c c b b b b b b b b b b b b b b b
4 b b b b b b b b b b b b b b b b b b b b b b b b b b b c c c c c c c c c c c c c
1 b b b b b b b b b b b b b b b b b b b b b b b b b b b b b c c c c c c c c c c c
4 c c c c c c c c c c c c c c c c c c c c c c c c c c c c c b b b b b b b b b b b
6 b b b b b b b b b b b b b b b b b b b b b b b b b b b b b b c c c c c c c c c c
7 c c c c c c c c c c c c c c c c c c c c c c c c c c c c c c b b b b b b b b b b
8 b b b b b b b b b b b b b b b b b b b b b b b b b b b b b b b c c c c c c c c c
4 c c c c c c c c c c c c c c c c c c c c c c c c c c c c c c c b b b b b b b b b
1 b b b b b b b b b b b b b b b b b b b b b b b b b b b b b b b b c c c c c c c c
6 c c c c c c c c c c c c c c c c c c c c c c c c c c c c c c c c b b b b b b b b
1 b b b b b b b b b b b b b b b b b b b b b b b b b b b b b b b b b b b b c c c c
4 c c c c c c c c c c c c c c c c c c c c c c c c c c c c c c c c c b b b b b b b
1 c c c c c c c c c c c c c c c c c c c c c c c c c c c c c c c c c c c c c b b b
16 b b b b b b b b b b b b b b b b b b b b b b b b b b b b b b b b b b b b b b c c
22 c c c c c c c c c c c c c c c c c c c c c c c c c c c c c c c c c c c c c c b b
Statistics
Marker 1 Marker 2 # Recombinants Total % Recombinants Std Error
T D17Leh119I 0 1397 0.000 0.000
D17Leh119I D17Leh119II 0 1397 0.000 0.000
D17Leh119II D17Mit18 0 1397 0.000 0.000
D17Mit18 D17Mit143 0 1397 0.000 0.000
D17Mit143 D17Mit164 0 1397 0.000 0.000
D17Mit164 Map3k4 38 1397 2.720 0.435
Map3k4 Sod2 2 1397 0.143 0.101
Sod2 D17Mit57 0 1397 0.000 0.000
D17Mit57 D17Mit113 0 1397 0.000 0.000
D17Mit113 D17Zt6 5 1397 0.358 0.160
D17Zt6 D17Zt7 0 1397 0.000 0.000
D17Zt7 D17Ph2 0 1397 0.000 0.000
D17Ph2 D17Ph5e 0 1397 0.000 0.000
D17Ph5e D17Mit78 0 1397 0.000 0.000
D17Mit78 Hst1 3 1397 0.215 0.124
Hst1 Tbp 0 1397 0.000 0.000
Tbp D17Ph4e 0 1397 0.000 0.000
D17Ph4e D17Ph1 2 1397 0.143 0.101
D17Ph1 D17Leh80 13 1397 0.931 0.257
D17Leh80 D17Mit165 0 1397 0.000 0.000
D17Mit165 D17Tu50 4 1397 0.286 0.143
D17Tu50 D17Mit59 0 1397 0.000 0.000
D17Mit59 D17Mit133 23 1397 1.646 0.340
D17Mit133 D17Ph3 0 1397 0.000 0.000
D17Ph3 D17Mit43 6 1397 0.429 0.175
D17Mit43 D17Mit46 0 1397 0.000 0.000
D17Mit46 D17Mit100 4 1397 0.286 0.143
D17Mit100 D17Mit173 0 1397 0.000 0.000
D17Mit173 Hba-ps4 5 1397 0.358 0.160
Hba-ps4 D17Mit30 13 1397 0.931 0.257
D17Mit30 D17Mit29 12 1397 0.859 0.247
D17Mit29 D17Mit167 7 1397 0.501 0.189
D17Mit167 Pim1 4 1397 0.286 0.143
Pim1 D17Mit23 0 1397 0.000 0.000
D17Mit23 D17Mit45 0 1397 0.000 0.000
D17Mit45 D17Mit101 1 1397 0.072 0.072
D17Mit101 D17Mit61 1 1397 0.072 0.072
D17Mit61 H2-K1 38 1397 2.720 0.435
H2-K1 D17Mit62 0 1397 0.000 0.000

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
04/16/2024
MGI 6.23
The Jackson Laboratory