Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes YOD1
  • Mouse genes Yod1
  • Rat genes Yod1
  • Zfish genes yod1
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Yod1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0004843	cysteine-type deubiquitinase activity	YOD1	IDA		Human	PMID:19818707
Molecular Function	GO:0004843	cysteine-type deubiquitinase activity	YOD1	IDA		Human	PMID:21376232
Molecular Function	GO:1990380	K48-linked deubiquitinase activity	YOD1	IDA		Human	PMID:21376232
Molecular Function	GO:0005515	protein binding	YOD1	IPI	UniProtKB:P55072	Human	PMID:19818707
Molecular Function	GO:0005515	protein binding	YOD1	IPI	UniProtKB:Q96CS3	Human	PMID:19818707
Molecular Function	GO:0005515	protein binding	YOD1	IPI	UniProtKB:Q9BUN8	Human	PMID:19818707
Molecular Function	GO:0005515	protein binding	YOD1	IPI	UniProtKB:P55072,UniProtKB:Q9BZV1,UniProtKB:Q9Y263	Human	PMID:27753622
Molecular Function	GO:0005515	protein binding	YOD1	IPI	UniProtKB:O14818	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	YOD1	IPI	UniProtKB:P0CG48	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	YOD1	IPI	UniProtKB:P25791-3	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	YOD1	IPI	UniProtKB:P35250-2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	YOD1	IPI	UniProtKB:P55072	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	YOD1	IPI	UniProtKB:Q05BL1	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	YOD1	IPI	UniProtKB:Q0VD86	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	YOD1	IPI	UniProtKB:Q15038	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	YOD1	IPI	UniProtKB:Q8N0X7	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	YOD1	IPI	UniProtKB:Q92567-2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	YOD1	IPI	UniProtKB:Q96CS7	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	YOD1	IPI	UniProtKB:Q96D03	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	YOD1	IPI	UniProtKB:Q99942	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	YOD1	IPI	UniProtKB:Q9BZR9	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	YOD1	IPI	UniProtKB:Q9BZV1	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	YOD1	IPI	UniProtKB:Q9NPE2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	YOD1	IPI	UniProtKB:Q9NRQ2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	YOD1	IPI	UniProtKB:Q9NU63-3	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	YOD1	IPI	UniProtKB:Q9NWF9	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	YOD1	IPI	UniProtKB:Q9UHC7	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	YOD1	IPI	UniProtKB:Q9Y458	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	YOD1	IPI	UniProtKB:Q9Y4K3	Human	PMID:32296183
Molecular Function	GO:0031625	ubiquitin protein ligase binding	YOD1	IPI	UniProtKB:Q86TM6	Human	PMID:24068323
Cellular Component	GO:0005737	cytoplasm	YOD1	IDA		Human	PMID:27753622
Biological Process	GO:0030968	endoplasmic reticulum unfolded protein response	YOD1	IMP		Human	PMID:19818707
Biological Process	GO:0016236	macroautophagy	YOD1	IMP		Human	PMID:27753622
Biological Process	GO:1904153	negative regulation of retrograde protein transport, ER to cytosol	YOD1	IMP		Human	PMID:24068323
Biological Process	GO:0035871	protein K11-linked deubiquitination	YOD1	IDA		Human	PMID:23827681
Biological Process	GO:0035871	protein K11-linked deubiquitination	YOD1	IMP		Human	PMID:24068323
Biological Process	GO:1990167	protein K27-linked deubiquitination	YOD1	IDA		Human	PMID:23827681
Biological Process	GO:0035523	protein K29-linked deubiquitination	YOD1	IDA		Human	PMID:23827681
Biological Process	GO:1990168	protein K33-linked deubiquitination	YOD1	IDA		Human	PMID:23827681
Biological Process	GO:0071108	protein K48-linked deubiquitination	YOD1	IDA		Human	PMID:19818707
Biological Process	GO:0071108	protein K48-linked deubiquitination	YOD1	IDA		Human	PMID:21376232
Biological Process	GO:0071108	protein K48-linked deubiquitination	YOD1	IMP		Human	PMID:24068323
Biological Process	GO:0071108	protein K48-linked deubiquitination	YOD1	IMP		Human	PMID:27753622
Biological Process	GO:0070536	protein K63-linked deubiquitination	YOD1	IDA		Human	PMID:19818707
Biological Process	GO:0070536	protein K63-linked deubiquitination	YOD1	IMP		Human	PMID:24068323
Biological Process	GO:0030433	ubiquitin-dependent ERAD pathway	YOD1	IMP		Human	PMID:19818707

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern