Comparative GO Graph (mouse, human, rat, zebrafish)

Source

Alliance of Genome Resources

Compare experimental GO annotations for Human-Mouse-Rat-Zebrafish orthologs to Mouse Whrn

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

This class contains
- Human genes WHRN
- Mouse genes Whrn
- Rat genes Whrn
- Zfish genes whrna,whrnb
Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Whrn

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0042802	identical protein binding	Whrn	IPI	PR:Q80VW5	Mouse	PMID:25406310
Molecular Function	GO:0005515	protein binding	WHRN	IPI	UniProtKB:O75445\|UniProtKB:Q8WXG9	Human	PMID:16434480
Molecular Function	GO:0005515	protein binding	WHRN	IPI	UniProtKB:Q00013	Human	PMID:17584769
Molecular Function	GO:0005515	protein binding	WHRN	IPI	UniProtKB:O75838	Human	PMID:23023331
Molecular Function	GO:0005515	protein binding	WHRN	IPI	UniProtKB:P35226	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	WHRN	IPI	UniProtKB:P49023-2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	WHRN	IPI	UniProtKB:P81274	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	WHRN	IPI	UniProtKB:Q08379	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	WHRN	IPI	UniProtKB:Q14145	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	WHRN	IPI	UniProtKB:Q4KMQ1-2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	WHRN	IPI	UniProtKB:Q5JVL4	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	WHRN	IPI	UniProtKB:Q8N7W2-2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	WHRN	IPI	UniProtKB:Q8NBT2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	WHRN	IPI	UniProtKB:Q96D03	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	WHRN	IPI	UniProtKB:Q9UMD9	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	Whrn	IPI	UniProtKB:Q08509	Mouse	MGI:MGI:5000171\|PMID:21236676
Molecular Function	GO:0005515	protein binding	Whrn	IPI	UniProtKB:P70290	Mouse	MGI:MGI:3654869\|PMID:16829577
Molecular Function	GO:0005515	protein binding	Whrn	IPI	UniProtKB:Q9QZZ4	Mouse	MGI:MGI:3606745\|PMID:15654330
Molecular Function	GO:0005515	protein binding	Whrn	IPI	UniProtKB:Q2QI47,UniProtKB:Q8VHN7	Mouse	MGI:MGI:4454934\|PMID:20502675
Molecular Function	GO:0005515	protein binding	Whrn	IPI	UniProtKB:Q9R0X5-5	Mouse	MGI:MGI:5487507\|PMID:22323458
Molecular Function	GO:0005515	protein binding	Whrn	IPI	UniProtKB:Q9R0X5	Mouse	MGI:MGI:5487507\|PMID:22323458
Molecular Function	GO:0005515	protein binding	Whrn	IPI	UniProtKB:Q8C031\|UniProtKB:Q9QZZ4	Mouse	MGI:MGI:3528099\|PMID:15590698
Molecular Function	GO:0005515	protein binding	Whrn	IPI	UniProtKB:P97479\|UniProtKB:Q8C031\|UniProtKB:Q9QZZ4	Mouse	MGI:MGI:3528099\|PMID:15590698
Molecular Function	GO:0005515	protein binding	Whrn	IPI	UniProtKB:Q2QI47\|UniProtKB:Q8VHN7	Mouse	MGI:MGI:6214629\|PMID:23055499
Molecular Function	GO:0005515	protein binding	Whrn	IPI	UniProtKB:Q2QI47	Mouse	MGI:MGI:5430895\|PMID:16301217
Molecular Function	GO:0005515	protein binding	Whrn	IPI	PR:Q2QI47	Mouse	PMID:25406310
Molecular Function	GO:0005515	protein binding	Whrn	IPI	PR:Q80T11	Mouse	PMID:17906286
Molecular Function	GO:0005515	protein binding	Whrn	IPI	PR:Q8VHN7	Mouse	PMID:25406310
Molecular Function	GO:0005515	protein binding	Whrn	IPI	PR:E9Q9W7	Mouse	PMID:25406310
Molecular Function	GO:0019904	protein domain specific binding	Whrn	IPI	RGD:62004	Rat	PMID:12641734\|RGD:632479
Cellular Component	GO:0005884	actin filament	Whrn	IDA		Mouse	PMID:12833159
Cellular Component	GO:0097440	apical dendrite	Whrn	IDA		Rat	PMID:12641734\|RGD:632479
Cellular Component	GO:0044303	axon collateral	Whrn	IDA		Rat	PMID:12641734\|RGD:632479
Cellular Component	GO:0036064	ciliary basal body	Whrn	IDA		Mouse	PMID:17906286
Cellular Component	GO:0005929	cilium	Whrn	IDA		Mouse	PMID:12833159
Cellular Component	GO:0005737	cytoplasm	WHRN	IDA		Human	PMID:16434480
Cellular Component	GO:0043198	dendritic shaft	Whrn	IDA		Rat	PMID:12641734\|RGD:632479
Cellular Component	GO:0016020	membrane	Whrn	IDA		Rat	PMID:12641734\|RGD:632479
Cellular Component	GO:0043005	neuron projection	Whrn	IDA		Mouse	PMID:12833159
Cellular Component	GO:0043025	neuronal cell body	Whrn	IDA		Rat	PMID:16434480\|RGD:1600128
Cellular Component	GO:0043025	neuronal cell body	Whrn	IDA		Rat	PMID:12641734\|RGD:632479
Cellular Component	GO:1990075	periciliary membrane compartment	Whrn	IDA		Mouse	MGI:MGI:4454934\|PMID:20502675
Cellular Component	GO:1990075	periciliary membrane compartment	Whrn	IDA		Mouse	PMID:24334608
Cellular Component	GO:1990075	periciliary membrane compartment	Whrn	IDA		Mouse	PMID:21212183
Cellular Component	GO:0048471	perinuclear region of cytoplasm	Whrn	IDA		Rat	PMID:12641734\|RGD:632479
Cellular Component	GO:0032391	photoreceptor connecting cilium	Whrn	IDA		Mouse	PMID:21212183
Cellular Component	GO:0032391	photoreceptor connecting cilium	Whrn	IDA		Mouse	PMID:17906286
Cellular Component	GO:0032391	photoreceptor connecting cilium	Whrn	IDA		Rat	PMID:16434480\|RGD:1600128
Cellular Component	GO:0001917	photoreceptor inner segment	Whrn	IDA		Mouse	PMID:17906286
Cellular Component	GO:0001917	photoreceptor inner segment	Whrn	IDA		Rat	PMID:16434480\|RGD:1600128
Cellular Component	GO:0098794	postsynapse	Whrn	IDA		Rat	PMID:12641734\|RGD:632479
Cellular Component	GO:0098793	presynapse	Whrn	IDA		Rat	PMID:12641734\|RGD:632479
Cellular Component	GO:0002141	stereocilia ankle link	Whrn	IDA		Mouse	MGI:MGI:4454934\|PMID:20502675
Cellular Component	GO:0002141	stereocilia ankle link	Whrn	IDA		Mouse	MGI:MGI:5698752\|PMID:26401052
Cellular Component	GO:0002141	stereocilia ankle link	Whrn	IDA		Mouse	PMID:24334608
Cellular Component	GO:0002141	stereocilia ankle link	Whrn	IDA		Rat	PMID:23055499\|RGD:13800540
Cellular Component	GO:0002142	stereocilia ankle link complex	Whrn	IDA		Mouse	PMID:17567809
Cellular Component	GO:0032420	stereocilium	Whrn	IDA		Mouse	MGI:MGI:3528095\|PMID:15590699
Cellular Component	GO:0032420	stereocilium	Whrn	IDA		Mouse	MGI:MGI:3528099\|PMID:15590698
Cellular Component	GO:0032420	stereocilium	Whrn	IDA		Mouse	MGI:MGI:3606745\|PMID:15654330
Cellular Component	GO:0032420	stereocilium	Whrn	IDA		Rat	PMID:16434480\|RGD:1600128
Cellular Component	GO:0032421	stereocilium bundle	Whrn	IDA		Mouse	PMID:20016102
Cellular Component	GO:0032426	stereocilium tip	Whrn	IDA		Mouse	PMID:24334608
Cellular Component	GO:0032426	stereocilium tip	Whrn	IDA		Mouse	PMID:31448880
Cellular Component	GO:0032426	stereocilium tip	Whrn	IDA		Rat	PMID:23055499\|RGD:13800540
Cellular Component	GO:1990696	USH2 complex	Whrn	IDA		Mouse	MGI:MGI:4454934\|PMID:20502675
Cellular Component	GO:1990696	USH2 complex	Whrn	IPI		Mouse	MGI:MGI:5618171\|PMID:25406310
Cellular Component	GO:1990696	USH2 complex	Whrn	IDA		Mouse	PMID:25406310
Biological Process	GO:0060088	auditory receptor cell stereocilium organization	Whrn	IMP	MGI:MGI:4432119	Mouse	PMID:27117407
Biological Process	GO:0021694	cerebellar Purkinje cell layer formation	Whrn	IMP		Mouse	MGI:MGI:5516521\|PMID:24011083
Biological Process	GO:0050910	detection of mechanical stimulus involved in sensory perception of sound	Whrn	IDA		Mouse	MGI:MGI:4454934\|PMID:20502675
Biological Process	GO:0051649	establishment of localization in cell	Whrn	IMP	MGI:MGI:4462398	Mouse	PMID:24334608
Biological Process	GO:0051649	establishment of localization in cell	Whrn	IMP	MGI:MGI:1857090	Mouse	PMID:24334608
Biological Process	GO:0045184	establishment of protein localization	Whrn	IMP	MGI:MGI:1857090	Mouse	PMID:24334608
Biological Process	GO:0045184	establishment of protein localization	Whrn	IMP	MGI:MGI:4462398	Mouse	PMID:24334608
Biological Process	GO:0060122	inner ear receptor cell stereocilium organization	Whrn	IMP		Mouse	MGI:MGI:2182951\|PMID:12124769
Biological Process	GO:0060122	inner ear receptor cell stereocilium organization	Whrn	IMP		Mouse	MGI:MGI:3714804\|PMID:17326148
Biological Process	GO:1990227	paranodal junction maintenance	Whrn	IMP		Mouse	MGI:MGI:5516521\|PMID:24011083
Biological Process	GO:0010628	positive regulation of gene expression	Whrn	IDA		Mouse	PMID:21212183
Biological Process	GO:0001895	retina homeostasis	WHRN	IMP		Human	PMID:17171570
Biological Process	GO:0001895	retina homeostasis	Whrn	IDA		Mouse	MGI:MGI:4454934\|PMID:20502675
Biological Process	GO:0050953	sensory perception of light stimulus	WHRN	IMP		Human	PMID:17171570
Biological Process	GO:0007605	sensory perception of sound	WHRN	IMP		Human	PMID:17171570
Biological Process	GO:0007605	sensory perception of sound	Whrn	IMP	MGI:MGI:4432119	Mouse	PMID:27117407
Biological Process	GO:0007605	sensory perception of sound	Whrn	IMP	MGI:MGI:1857090	Mouse	PMID:12833159

Gene Ontology Evidence Code Abbreviations:

EXP Inferred from experiment

IDA Inferred from direct assay

IEP Inferred from expression pattern

IGI Inferred from genetic interaction

IMP Inferred from mutant phenotype

IPI Inferred from physical interaction

HTP Inferred from High Throughput Experiment

HDA Inferred from High Throughput Direct Assay

HMP Inferred from High Throughput Mutant Phenotype

HGI Inferred from High Throughput Genetic Interaction

HEP Inferred from High Throughput Expression Pattern

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 04/23/2024 MGI 6.23

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023. Complete table of the annotations represented in this image is provided below.

Molecular Function

Cellular Component

Biological Process

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.