Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes THRAP3
  • Mouse genes Thrap3
  • Rat genes Thrap3
  • Zfish genes thrap3a,thrap3b
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Thrap3

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0046966	nuclear thyroid hormone receptor binding	THRAP3	IDA		Human	PMID:10198638
Molecular Function	GO:0051219	phosphoprotein binding	THRAP3	IDA		Human	PMID:20932480
Molecular Function	GO:0005515	protein binding	THRAP3	IPI	UniProtKB:Q9UBU9	Human	PMID:18596238
Molecular Function	GO:0005515	protein binding	THRAP3	IPI	UniProtKB:Q13573	Human	PMID:18794151
Molecular Function	GO:0005515	protein binding	THRAP3	IPI	UniProtKB:P38919	Human	PMID:20123736
Molecular Function	GO:0005515	protein binding	THRAP3	IPI	UniProtKB:Q9UBU9	Human	PMID:20123736
Molecular Function	GO:0005515	protein binding	THRAP3	IPI	UniProtKB:Q13573	Human	PMID:20467437
Molecular Function	GO:0005515	protein binding	THRAP3	IPI	UniProtKB:P23246	Human	PMID:20932480
Molecular Function	GO:0005515	protein binding	THRAP3	IPI	UniProtKB:P68400	Human	PMID:22113938
Molecular Function	GO:0005515	protein binding	THRAP3	IPI	UniProtKB:P38919	Human	PMID:23084401
Molecular Function	GO:0005515	protein binding	THRAP3	IPI	UniProtKB:P68400	Human	PMID:32707033
Molecular Function	GO:0005515	protein binding	Thrap3	IPI	UniProtKB:O08785|UniProtKB:Q9WTL8	Mouse	MGI:MGI:5511073|PMID:24043798
Molecular Function	GO:0003723	RNA binding	THRAP3	HDA		Human	PMID:22658674
Molecular Function	GO:0003723	RNA binding	THRAP3	HDA		Human	PMID:22681889
Molecular Function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Thrap3	IDA		Mouse	MGI:MGI:5511073|PMID:24043798
Molecular Function	GO:0003713	transcription coactivator activity	THRAP3	IDA		Human	PMID:12037571
Molecular Function	GO:0003713	transcription coactivator activity	Thrap3	IMP		Mouse	MGI:MGI:5511073|PMID:24043798
Molecular Function	GO:0003712	transcription coregulator activity	THRAP3	IDA		Human	PMID:10198638
Cellular Component	GO:0070062	extracellular exosome	THRAP3	HDA		Human	PMID:18570454
Cellular Component	GO:0016592	mediator complex	THRAP3	IDA		Human	PMID:10198638
Cellular Component	GO:0016592	mediator complex	THRAP3	IDA		Human	PMID:12037571
Cellular Component	GO:0016592	mediator complex	Thrap3	IDA		Mouse	PMID:12093747
Cellular Component	GO:0016592	mediator complex	Thrap3	IDA		Mouse	PMID:15340084
Cellular Component	GO:0016607	nuclear speck	THRAP3	IDA		Human	GO_REF:0000052
Cellular Component	GO:0016607	nuclear speck	THRAP3	IDA		Human	PMID:24100041
Cellular Component	GO:0005654	nucleoplasm	THRAP3	IDA		Human	PMID:24100041
Cellular Component	GO:0005634	nucleus	THRAP3	IDA		Human	PMID:10235267
Cellular Component	GO:0005634	nucleus	THRAP3	IDA		Human	PMID:20123736
Biological Process	GO:0007623	circadian rhythm	Thrap3	IEP		Mouse	MGI:MGI:5511073|PMID:24043798
Biological Process	GO:0048255	mRNA stabilization	THRAP3	IMP		Human	PMID:18794151
Biological Process	GO:0000956	nuclear-transcribed mRNA catabolic process	THRAP3	IDA		Human	PMID:20123736
Biological Process	GO:0042753	positive regulation of circadian rhythm	THRAP3	IMP		Human	PMID:24043798
Biological Process	GO:0045893	positive regulation of DNA-templated transcription	THRAP3	IDA		Human	PMID:10198638
Biological Process	GO:0048026	positive regulation of mRNA splicing, via spliceosome	THRAP3	IMP		Human	PMID:20123736
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	THRAP3	IDA		Human	PMID:12037571
Biological Process	GO:0000381	regulation of alternative mRNA splicing, via spliceosome	THRAP3	IMP		Human	PMID:20932480

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern