Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes SYCP2
  • Mouse genes Sycp2
  • Rat genes Sycp2
  • Zfish genes sycp2
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Sycp2

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	Sycp2	IPI	PR:Q14AT2	Mouse	PMID:18316482
Molecular Function	GO:0005515	protein binding	Sycp2	IPI	PR:P70281	Mouse	PMID:16717126
Cellular Component	GO:0000800	lateral element	Sycp2	IDA		Mouse	PMID:22711701
Cellular Component	GO:0000800	lateral element	Sycp2	IDA		Mouse	PMID:23133398
Cellular Component	GO:0000800	lateral element	Sycp2	IDA		Mouse	PMID:22011390
Cellular Component	GO:0000800	lateral element	Sycp2	IDA		Mouse	PMID:18283110
Cellular Component	GO:0000800	lateral element	Sycp2	IDA		Rat	PMID:9933407|RGD:11035335
Cellular Component	GO:0005634	nucleus	Sycp2	IDA		Rat	PMID:15942958|RGD:1598733
Cellular Component	GO:0000795	synaptonemal complex	Sycp2	IDA		Mouse	PMID:18316482
Cellular Component	GO:0000795	synaptonemal complex	Sycp2	IDA		Mouse	PMID:26362258
Cellular Component	GO:0000795	synaptonemal complex	Sycp2	IDA		Rat	PMID:9592139|RGD:69387
Biological Process	GO:0009887	animal organ morphogenesis	Sycp2	IMP	MGI:MGI:3526164	Mouse	PMID:16717126
Biological Process	GO:0006915	apoptotic process	Sycp2	IMP	MGI:MGI:3526164	Mouse	PMID:16717126
Biological Process	GO:0035234	ectopic germ cell programmed cell death	Sycp2	IMP	MGI:MGI:3526164	Mouse	PMID:16717126
Biological Process	GO:0007143	female meiotic nuclear division	Sycp2	IMP	MGI:MGI:3526164	Mouse	PMID:16717126
Biological Process	GO:0009566	fertilization	Sycp2	IMP	MGI:MGI:3526164	Mouse	PMID:16717126
Biological Process	GO:0007129	homologous chromosome pairing at meiosis	sycp2	IMP	ZFIN:ZDB-GENO-110909-3	Zfish	PMID:32092049
Biological Process	GO:0007129	homologous chromosome pairing at meiosis	sycp2	IMP	ZFIN:ZDB-GENO-220610-5	Zfish	PMID:32092049
Biological Process	GO:0048808	male genitalia morphogenesis	Sycp2	IMP	MGI:MGI:3526164	Mouse	PMID:16717126
Biological Process	GO:0007140	male meiotic nuclear division	Sycp2	IMP	MGI:MGI:3526164	Mouse	PMID:16717126
Biological Process	GO:0000080	mitotic G1 phase	Sycp2	IDA		Mouse	PMID:22164254
Biological Process	GO:0043066	negative regulation of apoptotic process	Sycp2	IMP	MGI:MGI:3526164	Mouse	PMID:16717126
Biological Process	GO:0051093	negative regulation of developmental process	Sycp2	IMP	MGI:MGI:3526164	Mouse	PMID:16717126
Biological Process	GO:2000242	negative regulation of reproductive process	Sycp2	IMP	MGI:MGI:3526164	Mouse	PMID:16717126
Biological Process	GO:0007131	reciprocal meiotic recombination	sycp2	IMP	ZFIN:ZDB-GENO-220610-5	Zfish	PMID:32092049
Biological Process	GO:0007131	reciprocal meiotic recombination	sycp2	IMP	ZFIN:ZDB-GENO-110909-3	Zfish	PMID:32092049
Biological Process	GO:0007130	synaptonemal complex assembly	sycp2	IMP	ZFIN:ZDB-GENO-110909-3	Zfish	PMID:32092049
Biological Process	GO:0007130	synaptonemal complex assembly	sycp2	IMP	ZFIN:ZDB-GENO-220610-5	Zfish	PMID:32092049

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern