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Sycp2
Gene Detail
 Symbol
Name
ID
Sycp2
synaptonemal complex protein 2
MGI:1933281
Synonyms 3830402K23Rik, 4930518F03Rik
Feature Type protein coding gene
Genetic Map
Chromosome 2
99.81 cM, cytoband H4
Detailed Genetic Map ± 1 cM


Mapping data(4)
Sequence Map
Chr2:178345293-178407685 bp, - strand
From VEGA annotation of GRCm38

  62393 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:8604  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog

Gene Tree: Sycp2

Human
homologs
Human Homolog SYCP2, synaptonemal complex protein 2
NCBI Gene ID 10388
neXtProt AC  NX_Q9BX26
Human Synonyms  SCP2
Human Chr (Location)  20q13.33; chr20:59863557-59933647 (-)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(4) : Targeted(4)
Incidental mutations (data from Mutagenetix , APF )
 
Male mice homozygous for a knock-out allele are sterile due to lack of axial element formation and subsequent failure of chromosome synapsis in prophase I spermatocytes, while females are subfertile with a sharply reduced litter size.
 
Phenotype Images(3)
Interactions
Sycp2 interacts with 216 markers (Mir16-1, Mir19a, Mir20a, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (19 annotations)
Process cell cycle, cell division, ...
Component chromosome, lateral element, ...
Function DNA binding, protein binding, ...
External Resources: FuncBase
Expression
Literature Summary: (3 records)
cDNA source data(13)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(15) cDNA(13) Primer pair(1) Other(1)
Microarray probesets(2)
Other database
links
VEGA Gene ModelOTTMUSG00000016353 (Evidence)
Ensembl Gene ModelENSMUSG00000060445 (Evidence)
Entrez Gene320558 (Evidence)
UniGene70781
DFCITC1587910, TC1639235, TC1666061
DoTSDT.55125319, DT.55259278, DT.91329001, DT.94210851
NIA Mouse Gene IndexU040977
Consensus CDS ProjectCCDS38370.1
International Mouse Knockout Project StatusSycp2
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000016353 VEGA Gene Model | MGI Sequence Detail 62393 C57BL/6J ±  kb
transcript OTTMUST00000039321 VEGA | MGI Sequence Detail 5717 Not Applicable 
polypeptide OTTMUSP00000017573 VEGA | MGI Sequence Detail 1500 Not Applicable 

For the selected sequences
All sequences(49) RefSeq(12) UniProt(3)
Polymorphisms SNPs within 2kb(202 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR024832 Synaptonemal complex protein 2
InterPro IPR024835 Synaptonemal complex protein 2/protein 2-like
Protein Ontology PR:000015863 synaptonemal complex protein 2
References (Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:202495 Park CS, et al., Genome-wide analysis of H4K5 acetylation associated with fear memory in mice. BMC Genomics. 2013;14:539
All references(40)
Other
accession IDs
MGI:1917938, MGI:2444271

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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Funding Information
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last database update
09/09/2014
MGI 5.19
The Jackson Laboratory