Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes SMARCAD1
  • Mouse genes Smarcad1
  • Rat genes Smarcad1
  • Zfish genes smarcad1a,smarcad1b
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Smarcad1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0140658	ATP-dependent chromatin remodeler activity	SMARCAD1	IMP		Human	PMID:22960744
Molecular Function	GO:0003677	DNA binding	SMARCAD1	IDA		Human	PMID:18675275
Molecular Function	GO:0005515	protein binding	SMARCAD1	IPI	UniProtKB:P43246	Human	PMID:18675275
Molecular Function	GO:0005515	protein binding	SMARCAD1	IPI	UniProtKB:Q13263	Human	PMID:18675275
Molecular Function	GO:0005515	protein binding	SMARCAD1	IPI	UniProtKB:P09874	Human	PMID:21549307
Molecular Function	GO:0005515	protein binding	SMARCAD1	IPI	UniProtKB:P12004	Human	PMID:21549307
Molecular Function	GO:0005515	protein binding	SMARCAD1	IPI	UniProtKB:Q13185	Human	PMID:21549307
Molecular Function	GO:0005515	protein binding	SMARCAD1	IPI	UniProtKB:Q13263	Human	PMID:21549307
Molecular Function	GO:0005515	protein binding	SMARCAD1	IPI	UniProtKB:Q13547	Human	PMID:21549307
Molecular Function	GO:0005515	protein binding	SMARCAD1	IPI	UniProtKB:Q92769	Human	PMID:21549307
Molecular Function	GO:0005515	protein binding	SMARCAD1	IPI	UniProtKB:Q96KQ7	Human	PMID:21549307
Cellular Component	GO:0000792	heterochromatin	Smarcad1	IDA		Mouse	MGI:MGI:5318003|PMID:21549307
Cellular Component	GO:0043596	nuclear replication fork	SMARCAD1	IDA		Human	PMID:21549307
Cellular Component	GO:0005654	nucleoplasm	SMARCAD1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005634	nucleus	Smarcad1	IDA		Mouse	MGI:MGI:5318003|PMID:21549307
Cellular Component	GO:0005634	nucleus	Smarcad1	IDA		Mouse	PMID:8219362
Cellular Component	GO:0035861	site of double-strand break	SMARCAD1	IDA		Human	PMID:22960744
Biological Process	GO:0006338	chromatin remodeling	SMARCAD1	IMP		Human	PMID:22960744
Biological Process	GO:0051304	chromosome separation	SMARCAD1	IMP		Human	PMID:21549307
Biological Process	GO:0000729	DNA double-strand break processing	SMARCAD1	IMP		Human	PMID:22960744
Biological Process	GO:0070932	histone H3 deacetylation	SMARCAD1	IMP		Human	PMID:21549307
Biological Process	GO:0070933	histone H4 deacetylation	SMARCAD1	IMP		Human	PMID:21549307
Biological Process	GO:0000018	regulation of DNA recombination	SMARCAD1	IEP		Human	PMID:11031099

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern